Gene detail

Detailed information of XP_032904998.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032904998.1	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	NC_045987.1	7615430	7649876	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032904998.1

ATGGAGGCCCAAGGAGGCAGTGAGACGCTGCAGGCGGAGAGAGAGCGGATTCGCTGGGAGATCCTGGAATTGGAACGGCGCCTGGGAGTGGACGCCATTGAAGAGATGGGAGGCAAGGAGGGCGGATGTGATGCTGAAGAAAAATCTGCAGAAGAGGACTGCCTTTCTCTGGTGGAGGCCTCTGTCAGTGAAACTGCACCTCGGCTCCCTGACAGTGTTTCGGATGACGAGGGAGATGAACTTCCCGAGGACCCTGAGACGTGCCTGCAGATGAATCTGGTGTACCAGGAGGTGATTGTGGAGAAGCTGCAGGACCTGGAGTTGCTGCTCACCCACAATAAGGAAATGCAGGCCGAAATAATGAGTGACTTGGCAGGACAAGATGTTGAGAAATCAAAATTATCAAAGAGTCAGCCTTCCATGTTCCTGGGGCACTTCATGAAGCCATACTTTAGGGATAAAGTGACTGGCCTTGGTCCTCCAGCAAACCAAGACACAAAGGAGAAGGCCACTCAAGGCATAAAACCGTTTGAAGAATTACTCGTAAAAAGCTGGAAGCAGAGAGAGAAAGACAAGCTAAAAGTCTCGATTGCAAGTGATTCGATGCAGCGACTGCTGCAGCCTAAACTTGTGAGGCTCGAGTACCTGAACAAGAAACTGACGCTGTCCCGCGATGAAAAGGAGAAAAGTGTCTTGGGGAAGCAGATTGGTGAAACTGAGCGGGAAATGGATAAGATTAACCAGATGACGCAACGGCAGTTGTTGGGAAATAGGTTTGACGACCACGATTGGATAAAGATCTCCAACATTGATTTTGATGGAATTCGCAAGGCGGAAGATATCAAGAGGGTCTGGCAGAACTCTGAACATCCAAGCATCAGTCAAACCCAGTGGAGCAGCGAAGATATAGAGCGGCTAAATGAGATCTCAAAGAGCACTGGCTATGTGGACTGGGAGAGTATTGCAAGTGAGCTACAGACATCCCGTACTGCTTACATGTGTCTTCAGAAGTATCAGGAGTTTAACAAGGACCTGAAGAGGAGAGAGTGGTCTAAGAAAGAAGACCAGATGCTTACTGAGCTTGTGCAAAAGATGCGTGTTGGAAACTTCATCCCGTATACAAAGATTGCGTATTTTATGGAGGGGCGGAATGGTAAACAGATTGTGTATCGCTGGTCCAAGGCACTGGATCCCTCAGTGACAAAAGGGCCTTGGACACCAAAAGAAGATGCGCTCCTCCTGAAGGCGGTGGCAAAATATGGAAACCGGGACTGGTACAAGATTCAAGAGATGGTCCCTGGGAGGATGGATTCCCAATGTAGAGACAGATATCGGAATGGCTTAAATCAAAATGTGAGGAAAGGAAAATGGACTGAAAAAGAAGAGAGCGATTTTAAAGTATTGATTGAGAAGCATGGAGTTGGCAAATGGGCCAAAATAGCTGCAGAGCTGTCAGGCAGGACCGACACGCAATGCATCAGCAAATGGAAGGGACTAGCAGGCCTAACGGCTCTTCGACAAAGGAAACGGAAGAGGAGACGACGGATCGAGTGCAAACGGGAAAGCACTCCTGAGGAGAGTTCTGAGGATTCTGAGAAAGACGACATCTTGGAGGAGATGGAGCAGGAGGAAGAGGACGAGGAAGACGAAGACGATGAGTTGGTCCAGAAAGTCGAACAAAAGAAGCGGCCGATAAAACGCAAGAAGCTAGCTGAGGCCATAGTGTTGGATGTGGACCGGTGGGTTCCAATCGTAGCTAAGCAGCAGCTACCTGCGGAGGAATACACAGCAGGCAAAGGTGACGACAACACAGCAGTGGAACAGCCTGTGGCCAATTTGAAGATTGAAAGTCAGACCCATCGCGGGAGACCTAGATCGAGCAAGATTTGGAGAAATATCCCCAAGGCACCCAGTGCTCCTCCAGGTGCGGGGGAAACAGTAAAGAGTGCATCATCTGCATCAACAGTAGTGTCAGAGGCAGAGCCACCTCCCAAACTCACCCAGAGCTTGGTGGCAACTGATGAGCAACAGGAGCCTCCACGATCCCAAAGGAATCCCAAGCAGCCAAGGCGCACGATGAGTACAGCAAAGCTCTCCGATACAAATCTGGAAAGAAGGTTGCTTGCAGAGATCTCCCGATGGACCACAGCAAGGCCACTTGTTCAGAGGGAAATTGATGTTCAACGCGAGAGACTGGAAGCAGCTGGTTTAAGCAGCACTCCTGTTTTTGTTCTCTTGTTACAGGTGTTCCGGATTGATAAAGAAGGATGCATGCAGATCATAAAAGATAAGATGAACAAGGCTACTCAAAGCTTGCCAGCAATCACGAGTGAAAACCAGTCGAGGTCGGGGCCCTACCTGAACCAGGTGAAAGGAACCACCATTGACGTGGGCAATGGGAAGACCATGGAAATGGCTCGGTTTAAGCTCAGCTCTGCAATTCCCAAAGAGAAACCAAAGACTGTCCACGATCTGCTTGCTGAGAAGCGACGAGCTAGGAACCTGATCAAAACCACTAGACTAGCATCCAGACCTTTGGTCATTCCACAACCATTGACAATCCAGCAACCATTACAGGTGGTGATGATGCCGCAACCCATGTCTTCCAGCAAGATGCCCTTTGGTCTTGAATCACAAGTGGCTAAACAATCTTCAATTCAAACCAGGAGCAGGACAAAGCCCAAGACTGAATCCACGGTGAGACTAACTGCACATGGGAAGCCAGTGGCAGGTACACCGCAGCTGTTGTCAGAGCAACCCAATGGAGAAGCTAACACAGGGGCTACTCCATTACCAAGGTCTAGTCGGGTAGGTTCATCAGCCATAGTCGAACCAAAGGAAAATATCACTGCACTGAATGCTGCTTCTGTTCAACCCGCTAAAGCCAACTGCGGTGCTAGGTGGGTGCAGCCAATTGCTCCAGCGCCACCAGTGCAGCCTGTGCTGCAGACCAACGGCATGGTGATTCCACTAATGCTCCCTAACTCCACCGTACCCATCATGGCCCTGGTCACTCCCCAGGGTCTGCTCTGCCTTGCTCCAGGCACAGTCGTGGGCCTGCCCAATCAGAATAGCCAAACTCCCACCGCAGTCACTGGCGCCAGCCCAACAACCACCGTCCCCCAGAGTGGAGCGGGTGCCAGCACCTCGTTGAGCTCGACAACTCAAGCGCAGGTGGACTCCACCATTGCACCCAGTCAGTGGGAGATTAGTGGCCCCAGTGTAGCACCAGTGCAGACCAGCACCAGTGTAACGCTGTCCGCAACCCAGCCACTCAACACTCCTCCCCTGGCGGTGTGCAAGTTGGTCCCATCATCATCATCCAGCTCCGTGCAGATTCCACAAACACTGTCGCCTGCATTGGCTCCAAGTGCTGCAACAACGTCCACAGATCCTCCAGCACTGGAGGCCACAAAGCAGGCGGCAGCTAACCGCACTGATGGCAACGTTCCCACCCCTCTCTCGACCACACAGCTTGCTCAGGGATCTGGACAATCGAGGGTGACTGTAGATGTTGCAAGCACCAGGTCACCATCTACACAGCCCGGCAGTGTGGCTCCACCCGAGGGGACCAAGCAGCCAGTCCCACCGTCACAGTCGGACAAAACCTCTATTGACTTTACACTTTTGTGTGACGACAAAGATCCAGTAACGAGAGACTGGCTGGAAGGGAAAGGTGGTATCCGTGTACCAGGGACGCCTACTACTCTACCTTATCTGCCACCCTTTGCCGCGACTCTGAGAGGCTTCTCAAACCTACTGCTGCACAAGAAGGTCCTGGAGCAGAACGTGCTTGCCCACGAGGCAGCCGATGTGAACGAACCAATTGATCCCAAAATAAGACTTGAGGCAGCCAGGGTACAAGTGAGGGAGCGTCTGCAGAACAGCCCTGCGTACCAGCTCTTGAAAGCTCGCTTTCTCTCCGCCTTCACACTACCTGCGCTTCTGGCCACCCTACCGCCGGAGGGGATTTCCACCACAATCAACTCATCAAATGAAGATCTCGACCAAGACTCGGGAGAATGCGAGTACCCGGAGACTGACATCGAGAGTGAGGAAGATCCTGAAGGATTGCCAGAACACTGCATGGTGGAGGAAGTGACCAGCAGCGAGCCAAACCAGCCCTTTGAGATCCCTGCTGACCTGTCATTTGGCTGTGACTTGCTGGGCAGTTTGGAAACAGAGCCAGAGGATCAAAACCCCCCAGAACCTCACAATGTTCCAGAAGTTTCTGTTGCCCCTGAGGGCAAGGTTCATGTGGCAACAAGACGAAGCCGTCGCCTGAGGAAAAATCCTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF13921	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR017930	Domain	Myb domain	Interproscan
IPR051575	Family	Myb-like DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0019185	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-