Gene detail

Detailed information of XP_032904280.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032904280.1	CATION-TRANSPORTING ATPASE-RELATED	NC_045986.1	29280554	29335262	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032904280.1

ATGGATGCAGATAGCAGTAAGCTGCTGAAGAGCCAGCCGTCGGGTTACGGCACAGTCCGCCACTCTGGCACCACTGTCTCCATGGAGGTGACTGGATACAAGCAAGTGAGATGGCGGGTAATTCTCTGCCACATTCTTACTGTACTGACAGTAGGAATACTTTGGCTAGTTTTTTACTGGAAGCCAGTGCTGGAAGTGCTTTTTAAGTGCAACCCCTGTCATCTGTGTCAATCTGATTGGGTTGTAATCAAGGATTCATTTAACCAGCGATTTATCGAGCGAGTGAGGACAGAGGAGATTGAGGATGACTGGTTTGCACCGTCAGCTGAATCTAGCGGCGATGATATGCGAACTACATTGGCCATAGGAGTACTTGAAGATGATTGGAAAGATACATTGCAACTACAGAAACAGGAGGAGAAAAGTGTGATTCGATACTACACCTTTGAGGGTTTACGCTACATTTGGATTGAGAAGAAAGGAAGCTTCTGCAAGCTCAGCGATCTCGATGAGTCTCTATCATGTGAAGACATTCACAAACAACAGAAGGGACTCAGCACACACAACCAAATTAGAAAAAGGCAGGTATATGGGCGAAACGTGATTGAGGTGCTTGTAAAATCATACTTCACACTATTAGTACAGGAGGTCTTGAACCCTTTCTACATTTTTCAGATTTTCAGTATTATACTTTGGGTCACTGAGGAGTATTATTACTATGCAGTGTGTATCCTGTTCATCTCCGTGATATCCATTGGTATATCCCTATACCAGACACGCAAGCAAAGTGTGACACTGCGGAATATGGTGAAGTTGACACTTAATGTACAGGTCCGTAGAGATACTGGAGAAGTGGAAATGGTGAATTCTCAGCATCTGGTTCCTGGTGACTGCATAGTGATCGCTGAAGATGGAATTCAGGTTCCTTGTGATGCAGCACTTCTTACAGGAGAGTGTATGGTCAATGAGAGCATGCTGACAGGTGAGAGTGTACCGGTGATGAAGACGCCTCTACCTGATCAAGATGTGAACTATTCCTCTGAAGAACACAAACGGCACACCCTTTTCTGCGGCACCCAGGTTGTACAGTCAAAGAGCTACAGCGAGGAGCAACCCGTTTTGGCTGTGGTAGTGAGAACAGGCTTTTGCACGAGCAAAGGAGAACTGATCAGTTCCATTCTGTATCCCAAGCCTTTGGGATTTAAGTTCTACAAAGATGCTATGAAGTTCATTATCTTTCTGGGAGTTCTCGCTTTGATTGGAGACATATACAGCATAGTGATTCTAGAAAAACAGAAGGTGTCGGTGGGACGTGTGGTGACGCGTATCCTCGATCTGATCACCATCATAATTCCGCCCGCGCTACCCGCCGCGATGACTGTTGGCACCATCTACGCCCAAGACCGACTGAAAAAATACGGGATATTTTGTATCAGTCCTCCGCGCATCAACATTTGCGGCAAGCTGAAGCTCATCTGTTTTGATAAGACAGGAACACTAACAGAGGAAGGTCTGGACTATTGGGGAGTGGCACTGGCAACAGACAAGAACTTTGATCCGATTATCCACGACACCCAGCACCTCGGGAGCAGTCGGATGCTGCATGCCCTGGCCACGTGTCACAGCGTCACACTGCTCAACAACCAGCCGATCGGTGACCCACTGGACCTGAAGATGATCGAGTCAACTGGTTGGACTCTGAATGATGAGATTACAAACTTGGACATAAGCAGAACGTTTGGAATGAAAGTTCTAGCTGTGATGAAGCCTCCACTGGTGGAAGAACAGCCTTATGGAAGTAAACAAGAGACGATTTTGGGGATTATTCGCCATTTTCCATTTGCCTCAACATTACAGAGAATGAGTGTGATCACAAAGAAGCCAGATGATTCACCATTTGAGGTGTACTTGAAAGGGGCACCGGAGATGGTGGCCAGTCTCTGTTTAAAGGAAACAGTTCCTGCAGATTTTTTAGAAGTATTAAGGTACTATGCCAAAGATGGGTATAGAATTCTGGGACTTGCACACAAGACACTAAATCAAGACATTACCTTTGAGGCAGTGCACATGTTGGAGAGGAATTCCGTGGAGAGCGAGTTGACATTCCTGGGATTCCTGATCATGAAGAATATTTTAAAACCGGAAACAAAACCCGTCATTGACAACCTGATCCGAGCCAATTTCCGAACTGTAATGGTGACAGGAGATAACATGCTGACCGCTCTGAATGTTGCCAGGAATTGTGGAATGGTGGGTTGGACGGACAAAGTGATCTTTGCCAATGCGTCCCCACCCTTGGCTGACAAACCTGCCTGTGTGAAATTCCTGCCTTCAGACCCAGCACCAGATTTGAATGGGACCGAGCTGCAGCCACAGCCAGAGAACCACACTTCGGAACAGTCGTACTATCACTTTGCACTGAATGGAAAATCGTTTGCAGTGATTTACGACTATTTTCCAGATCTGCTAGAAAAAATCCTGCTTCGGGGCACTGTTTATGCTCGGATGGCTCCCAATCAAAAGACTCAACTGGTGGAGAGTTTGCAGAAATTGGAGTACACTGTAGGGATGTGCGGAGATGGAGCCAATGACTGTGGGGCTTTGAAAGCTGCAGACGCTGGGATCTCGCTCTCGGACTCCGAGGCCTCGGTGGCATCCCCCTTCACCTCTAAAATAGACAACATTGAGTGTGTGCCCATGGTCATTCGGGAAGGTCGAGCCTCTCTTATCACCTCCTTTGGAGTTTTCAAATACATGGCCATGTACAGCATGATCCAGTTTGTCTCGGTGCTAATATTGTACACGATCAACTCAAACTTGGGAGACTGGCAGTACCTGTACTTTGACCTTGTCATCACTACAACTGTGGCCATACTCATGGGTCGAACAGGTCCTGCAAAAGCGCTTGTGGCACAGCGGCCTGTGGGGAGTCTGATTAACATTACCATCTTGGGCAGCCTGCTGCTGCAGACCGTGCTAGTCATCCTGATTCAGGTCCTGACTTACACCGTCACTGCCACACAGAGCTGGTTTGTTCCTGCCACCGTCAGTTCCGCTGGCAACAAACTCCCAAACTATGAAAACACTGCCTTGTTCTGTATATCTGGATTCCAATACCTCATCCTGGCAACAGTACTTTCCAAAGGTCAACCCTTCCGCAAGCCGCTGTATTCTAACGTGCTGTTCCTGGTCGCATTGGTTCTGCTTTATGCCGTGATGATATTTTTGACACTTTACCCACTTCAGTTCATGCGAAAGATTCTGCAGCTGATGTTCATCGGTGACTTGAAATTTAAATTGTTGTTGCTCGGCTTTGCAGCATTACAATTCTTTGTTTCCTTTCTATTTGAGATCGCTATAGATAATGGATTTCTAAACATTTGCAAAAGGCCATTGTGCAAGAGGAAATCGTCCCAAAAGCTGTATAAAAGACTGGATAAAGAACTTTGCTACAATTTAGCGTGGCCGCCTCTTAATGAAATTATATATGCCGAATCAAGGAATATCGTCATTGTGGAATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00690	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF12409	P5-ATPase	P5-type ATPase cation transporter	Family	Interproscan
PF13246	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757	Family	P-type ATPase	Interproscan
IPR004014	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR006544	Family	P-type ATPase, subfamily V	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR044492	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR047819	Domain	P5B-type ATPase, N-terminal	Interproscan
IPR047821	Family	P5B-type ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45630	CATION-TRANSPORTING ATPASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006874	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0010821	Biological Process	regulation of mitochondrion organization	Interproscan
GO:0015662	Molecular Function	P-type ion transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016243	Biological Process	regulation of autophagosome size	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0019829	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0061909	Biological Process	autophagosome-lysosome fusion	Interproscan
GO:0140358	Molecular Function	P-type transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-