Gene detail

Detailed information of XP_032903116.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032903116.1	TIGHT JUNCTION PROTEIN	NC_045984.1	32790751	32836004	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032903116.1

ATGGCTGTCAGATTCCAAGATCAGTTTCCAGAAATGGAAGAAACTGTGATCTGGGAGCAGCAAACAGTATCGCTACACCGGGATTCCAAGATCGGGTTTGGCATCGCCATATCGGGAGGGAAGGACAAACCCAGCAGCAGCACCGGGGAGACGGCCATCCTCGTCTCAGACGTTGTCCCGTCTGGACCAGCCAACGGAAAGATTCAGATTAAGGACAGGATCGTTATGGTGAACGGCGTTTCCATGGAAAATGTGCCTTCTTCATTTGCCATCCAGTGTCTGAAGAGTTCTGGGAAAGTAGCTAACATCACAGTGAAGAGGCCCCGCACTGTCCACATCCCCGTGACCAGCCCGGCCCCGGCCCTGGCTCCGGGCTCCTTCTATTCCGATTCAGACTTTGCCCACGACGATGCGTCTGACGAGGACGAGGACTACGACCCGGCCGACAGGAACCTGCGGCGGATCCAGAACCAGAACCTGTACCACGAGGATCACCGGCACGGTGACAGCGACCGGTACTCTGAGAGAAACCACAGCCACGACCGCAACCCCAGCCCGTCACGGAGTTACAACCGCAGCCCCAGCCCCCCACGCAGCCACAACCATCAACACAACAGCCACTACAACCGGGACTACAGGAGAGAGGACAGCCCGGCCTCGAGTCACCATGACCAGACCAGCCACCAACCGGTCAAACAGCCCATCAAGAGCTTCCTCATTAAAAACGCCAGGGATGAAGAATATGGACTGAGGTTAGGGAGTCAAATCTTCATTAAACACATGACGTCGAGTGGTCTTGCCTCAAAGGAAGGCGTGTTACAGGAGGGAGACATCATACTGAAGATCAACGGCATTGTGACAGAGAACATCTCTCTGGAAGATACAAAGTCACTGATTGAGAAATCGGAGGGGAAGCTGAACCTGGTGGTTCTCCGGGACAACGAGCAGTTCCTGATCAACGTCCCGGAGATGGAGGACAGCGATGACAACAACTCGGGGATGGAAGATATTTCAGATCTGGATTCTGAACGTCCTGCTTCACCCATCGCTAGGCCCGAGCCCGTCAACACCATGAAGACCAACGGCAGCTTAAAGCCGAACAGAAACACAGTGACAGTGGTGAAACCCGTGGCCTCCCAGTCCCCTTACGTTATCGAGGACCCAATATATAGTGTGTCTACAAAAGCAACAAAGTCAAAACCACCAGATGAGCACAATGTCGGCTACAGTCCGGACATGAAGGTGGCAAGGTTTATGAAGGATGCCAGCGTGGGCATGCAGCTAGCCGGAGGCAACGATGTTGGAATATTCGTGTCTCGGGTCCTCGTTGACAGCCCCGCCGCCCGACAGGGAATCCAGACAGGAGATCAGATCTTAAAGGTGAACGACGTCAGTTTCCAAAACCTCACGCGTGAAGAGGCGGTGTTGTTCATGCTGGACATCCCTAAAGGACAGCAGGTGGACATCAGAGCTCAGCGGAAGGAGGACATTTATAAGAAAATGATCAACTCCAACGTTGGCGACTCCTTCTACGTGCGAACGCACTTTGACTACGAGATAGAGGGGTCCCAGGACCTGAGCTTCAGGAGAGGCGACGTGTTCCGGGTCATCGATACCATGTACAAAGGGAAGCTGGGAGCATGGTACGCCGTGCGGATCGGAGGGGACTTCCGGGAGCAGGAGAGAGGCAGCATCCCCAGCAAGAACAGAGCTGAGCAGATCGCCAAGGTTGAAATGCAGAAAGTTACCAGCGGCTCATCGACCGGCCCGCGGGCAGAGTTCTGGAAGATGCGGGGACTGAGGGGGGCCAAGAAGAACCTCCGGAAAAGCAGAGACGACCTTTCAGCCTTGACCATCCAGGGCAATTTCCCGCCCTACGAAAGAGTCGTGCTGAGAGAAGCCACTTATAAAAGACCGGTGGTGATCCTTGGACCGATTTCAGACATCGCTACTGAGAGGCTAGCCAGGGAGATGGCCAGCCAGTTCGAGCTTGCCCAAACGGTGCCAAGGAATGCAGAGGAAGGAGCATCATCCATCATCAGACTTGAAACAGTACGCCTCATCTCCCAGAAGAACAAGCACGGTCTACTTGACATCACGCCGTCCGCCATCGAGCGTCTGAACTACGTGAAGTGGTACCCCATCGTGGTTTTCTTCAACCCGGAGAACAAGCAGGAAGTGAAGGCCATGCGGCAACACCTCCTCCCACAGTCACGGAAGAGCTCCAAGAGTCTGTACACGCAGGCCGTCAAGCTGAGGAAAAACTGGGCACACCTCTTCACAGGTACAATAAACTTGAATTCTGGTTCAAGTGCATGGTACGAAACGTTGAAAGCAATAATCAAAGAGCAGCAGACACAGCCAGTGTGGTTTCCTGAAGAGAAGAGTGAAGAGGCGGGGACTGAAGACATGGAGCTGCTGAACCGATCCAACAGCATGAGCATGGACTACCTGAGCTGCGACGAGAGCAGGGTGAACAGCGATTACGAGGACACAGATGGAGAAGGCGCTTACACCGACAATGAAATGGACGATGGGCTGGACAGGCCGGCCATCACACGCAGCTCTGAACCCAGCAGGACCCAAGTGTCGGAGATGTCCACCACGGAGGTGTACACTGCACCCAAGACCCACGCGGACCCACAGGTGAAACCTCAGGGGCAGTACAGAGATCCTTATTATACCAGACCAAGCGAACGTGATATCAATGCAAGCAAGTACAGTCGAGAGCCGGTCTACAGCTCTGAAGAAGATGATGAATGGAACGGTCCAGCCACGGAACTGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00625	Guanylate_kin	Guanylate kinase	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR005417	Family	Tight junction protein ZO	Interproscan
IPR005420	Family	Tight junction protein ZO-3	Interproscan
IPR008144	Domain	Guanylate kinase-like domain	Interproscan
IPR008145	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13865	TIGHT JUNCTION PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005923	Cellular Component	bicellular tight junction	Interproscan
GO:0045216	Biological Process	cell-cell junction organization	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0090557	Biological Process	establishment of endothelial intestinal barrier	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0150105	Biological Process	protein localization to cell-cell junction	Interproscan
GO:1905605	Biological Process	positive regulation of blood-brain barrier permeability	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-