Gene detail

Detailed information of XP_032898950.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032898950.1	2-5 OLIGOADENYLATE SYNTHETASE	NC_045980.1	30200274	30236200	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032898950.1

ATGAAGGATGCCGTGAACAGAATCTGCGAGTTTTTAAAGAACCAATGTTTCATGAATCAACCCAACATTAGTGTCATCAGAGCCGTGAAGGGTGGATCGTCGGGGAAAGGAACAGCTTTAAGAAATAGTTCGGATGCCGATCTTGTCGTCTTCCTCAGTTGCTTCAAAAGTTTCCAGGACCAGAGAGCCAACAGGCAGGAAATCCTGGAGGAAATTCGGAAAATGCTGGAAAAGTGCTCCAGAAGCCTTGCATATGAGATTCATGATATTCAAATCACGATAGGTTCAAGCAATAACCCACCCAAATCTATGAGCTTCATATTGCAATCGAAAAAGAGTTCAGAGAGTGTGGAATTTGATGTTCTGCCAACCTATGATGCATTAACACCACAGTGCAATTTCAGTGTTGCGCATCTCAAGTTAATCAATTTTGTAAATGAAAATAAGGTCATGGATGGAGAATTCTCTCCCTGCTTCACTGAACTTCAGAGAGAATTTGTGAAACGGCATCCGGCAAAAGTTAAAGACTTGATTCGTCTGCTGAAATATTGGTACAAGGAGTATGTCAAGCCACGGAAATCGGAGTTGTGTGGAGCACGGCTCCCTGAAAAATATGCGGTGGAGCTATTGACAGTCTATGCCTGGGAACAAGGTAATCATCAGGAGAGGTTTGATACTGCCCAAGGGTTCCGCACAGTCCTGGACCTGATCTGCCGCTATCAGGAAGTCTGCATCTACTGGACAAAGTTCTATGATGTCAACAATCCAACCGTGGCCGACTTTTTAATCAGGAAGCTCCATGGCAAGGGGCCATTCATTCTTGACCCAGCCGATCCAACTGGAAACGTGGCTTCATCAGGTGGTTGGAATGTGATGCAGGATGAAGCCAGGAAATGTCTAAGCATGCCCTGTGTCATGAACACCCCAGCTTGGGATGTCCAGCCAGTGAAGACATTTAAAATCACTGTGACCAGCCTGGATGGTAAATCGTTACAACAAAAGGCCGACATTAATTTCAAGGTCTCTGAGATCAAACGCAACATTCATCAAAATTGGAAAATTTCAGTCTCCCAGCAACAACTGGTATTCAATGGCACCATTTTGGATGATGGAAAAACCTTGTTGGGTTCCAGGATCTTCTTTGATGCAACGATCCAGCTAATGCCAAACACAATGGAAATATTTGTCAAATACAATGAGCATGTCACACTCCTGAATCGAAACTCAGGCAGAACACAAGTGAATAGAAACCAACGGCGATTAAAAACAAGCTTCCCTGTTGGGCTCACTTCCACCAGGAAACAAAGCCTGTGCACAGTGAAGAAAAGAATTATGGATTTGTATCAAACACAAGCCCGCAATCTGGACACATTTATTTACTTACATCTCCAACCTGATGAAAATTTTTTGAGACTAGTGGCTGAGACCATTGACAAGATTTGTACCTTCTTAAAGGGACAATGTCCCTATAAAATCAGTAAAACCGTGAAGGGTGGCTCCCTTGGAAAAGGAACAGCTGTAAAAAATGGCTCTGATGCGGATATGGTTGTCTTTCTCAACTACTTCAAGTGTTTTGATGACCAAAAGAAAAACCGGGCTGAAATTTTGAGCAACATTCGTGAACTGTTGTTGAAATATGAGAAAAACATTGGACATCAGATCAAAATGTCACAGCCCAGAATAATTCCTGCTTTGTCTTCTCCTCGCTCGCTGAACCTCCTGTTTAAATCCACAGAATCGTCTGATTTTGTTGAGGTCGATGTTCTCCCTGCATTTGATGCCTTAGGTCCACTGACATCGACTGGCGTGAAGAATCAGGTCTATGAAGGTCTCATTGCTACCGGAGAACGTGGGGGAGAATTCTCGACATGCTTCACCGAACTCCAGAGGGACTTTATAAAGACACGACCCACTAAACTGAAAAGCCTTATCCGACTTGTGAAGTATTGGTATACTGAGAAAGTCCGTCGCCCCTGCAAAGGCCAACTGAGAACCGGAGAGTATTTACCACCGAAGTATGCTCTCGAACTGCTGATCATCTATGCATGGGAGAGCGCTGAGAAGGGGGTAAATTTCAACACCGCGGAAGGATTTCGCACCGTTCTGGAACTGATTGTCCAGTACAAAGACCTTTGGATATTTTGGACCACAAACTACAACTTTGACTCTGACAACATTGGCAGATTTCTGAAAAACAAACTTAAAGAACCTAAGCCAATGATCCTTGACCCCGCAGATCCAACAGGTAACGTTGCTGCAGCAGCGAGATGGGATCTAGTGGCAGAAGAGGCCAAGAGATGTTTACAGCAGAACTGTGTGCAAAATGTCAACTCCTGGAATGTTAAGCCAGTGATGACATTTGAAATCACTGTGACCAGCCTGGATGGTAAATCGTTACTACTAACGGCCAACATTAATCTCAAGGTCTCTGAGATCAAACGTAACATTGATCAAAATTGGACCATTCCAGTCTCCCAGCAACGCCTGGTATTCAATGGCACCATTTTGGATGATGGCAAAACCTTGTTGGATTCCAGCATCTTCTTTGATGCAACGGTCAAGCTACTCATGCTAAACACAATGGATATATTTGTCAATTACAATGGGCGTAATCTGACAATTCAGGTTTCACCAAGCGACAAGGTTTCAAGTTTAAAAAATGAAATTGAATCTCGGACACACGTCCAACCAAGGCAGTACTACTTGACCTTTCAATCTCATCAACTTGAAGATGAACGTACACTGCAATCTTACGGCATTAAGAAACTTTCTACCATCATGGTCAACCTGCGACTGCGTGGTGGCAACGAACTCCAATGTTTTAATGCAGAGAATCATAGTTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF10421	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR006116	Domain	2-5OAS/ClassI-CCAase, nucleotidyltransferase domain	Interproscan
IPR018952	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR043518	Conserved_site	2-5-oligoadenylate synthetase, N-terminal conserved site	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11258	2-5 OLIGOADENYLATE SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001730	Molecular Function	2'-5'-oligoadenylate synthetase activity	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0045071	Biological Process	negative regulation of viral genome replication	Interproscan
GO:0051607	Biological Process	defense response to virus	Interproscan
GO:0060700	Biological Process	regulation of ribonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-