Gene detail

Detailed information of XP_032898781.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032898781.1	OVOCHYMASE-RELATED	NC_045957.1	21479512	21510312	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032898781.1

ATGCTTCTCTTGCTGGTCGTGTTGTCGTTGTGGCCCATCGTGTGCCCTGTTTCCACTCAGCGGCCAACTTGCGCTTACTACCTGAGCAGGCGTCAGAGTGGTGTGTTTCATTATGATCGGCAGAATCGTTATTCTTTGACTTTTCCTGCTGCCAAACTGGCTTGTGAACAAAGCTTTGGAGCTGTGATGGCAACTAGGGATCAACTTCATACCGCTTGCCTTTCTGGTCTAGAGGAGTGCAGGGCAGGCTGGCTGTTGTCAGGAGAAGTAGGTTATCCGAGGATTCACAGAAGCTGGAACTGTGGCCTATACAAAGTAGGCATAATATCATATGGTGTCAAAAAAAACCTGCAGGAAAAATGGGATGTGTATTGTTATAAACCTGATGATGACTGCTCTAATTATAATAAATTGCTACAACTGGAAGACAATATTTTAAACAGCAAATCAGTGAACATGTCACTGATCAGAACATTAGCTTCCTCAAGGAAGAATGTTTCCAAGAAACAAGAAATGCCTAAACCAAAACAGATCAGGACACAGAAAGATATAAATGTTCAGTTTTCCAATATAGCAAAACCATTGTATCTGAGTGAGCACAGTACACATCTATATAGCACGGAAACATCAACCTCTGTCCTATCTGTAAAATCGTCAACTGCTTTTCACATCAACAGTCTGGAAGCAGAGAGCAGTAAGGAACCATTGCACATTGAGAACTCTGATAAATGTTCAAATTGTAAGCATTCATTAGAGACTGAAGAAAAAGGCAAAGTTACTGCAGCTTTGGATACAAGTGGGACTAAAAATGAAAACCAAACTGAAGTGATAAGAAATTCATCGACATCTTCTGCTGCAGAGTTGTTACACATTTGGAATGTGCCTGTGGATGGATTTACAACCTCTACAATCAATAATGATGCAGGAGATGAAGACATTAGACCTTCTCAAGGTTCTTTTAATCAGCAAAAACATGTTGGGGTTGCTATCCCAACTGCTGGCCTTGAATCTGCTAAAACCAACTCTGTGACTTCACAAACTGTGCAACCAAATATGCATTTAGTGACTTTAAAATCTACATCTCAAATATCACCAGTTATAAGATTTATTACAGAAAGCAGTAATACATTACTAAGATCTGGGACAAATACATTTGGCACAGAGTTACCTTCATCCTCTGTGGGGGCTGTAACACCTGGACTGTCCTTGGAGGATGTGAGTAATGACAAAATGGGTCAACATCATCAAACTGTCTTGAAACTAATAGCGAATTATCTGAATGGGTTAAGACGGTTCCCTTCATCTGATTCAAATGCTACAGAATGGAAAAGTGAGCGTGCTGATGTAATTAATAGCACACACTCAGAGTTGAACATGGAGAAGCCTTTTATAGAAAAGAAGAAAGGGAAAAAACTCAAATTTGCTTTTCAAGGAGAAGTCGCCCAATTAGACTCTGTAAACACAAATGGGGTAACGGAAGTGGAAGAAGCTCAAGCACTCAGTACAGATCTTCAAATTTTTCAAAGTGTAACATCAATAAAATACAATACAGCATTGCCAGAAATAACAAATGCAGGAAATGCTTTTCATCTTAAGACAGCTAGGATTGATAATATCCGGTATCCAAACGAAACAAATCCAAAGAATCAAGGAATAGATCAACTTGGTTTCATCAGGAAAGATAATAAATCTCTTTCAGAAACAGGACACAATTATGGGGCAGTAATGAACCATTTACAAATAACTGAGGCAAGTCTTCCACAAACTGCAGTCACCAATATACGACTGACTACATCTGGTCCAGATGAAGTCACTTTTCCAGTAACGTTCACGTCAGAGACATATGTACAGCAGGATGTGACCTCAGATGAAAATTCTATCAACATAGCGACCAGTAAGAATTACTTGCACATGATCAGAAATGACAGCGATATTCACCTTCTAACAAATGCAGATCCAACTCCAATGCAGTCGGTTAAAACTAATCCCAATATCTCGGAGCCATCTTTCATAATTAGTGAAAACAGCACGGTGCTACTAAATTCTTCTGAAGACTCTGTTGAAGTGGAGACAGAAGGAGTTCCAACACCAACAGAGCAGTCTGGCTCATATTTTGTGACACATTTCATGGTGGAGGGTTTTGCCTCATTGGATGTAACCAATGTTGCCAATGTCACAGATGACAGCACTGAATCTCCATTGCCAGCTACATCATTTATGAGCCCTGCTTCTGTACAAATACCTGCCACCGATGAACCATTTTTGCAGCTCCATCAGATGAGCACTTTGAGCTTTTCAGCTGTCACCAAAGAAATAACACCAAAAGGAGATACTCTACTTCCATTCACTTCCTCGTTTATGTCCTCAGATTCATGCGGTGGTGTGATGAGACAAACTGAGGGAAGATTTCAGACACCACACTATCCACAATCCTACCCAAGTGACATGGACTGCACCTGGGAGATTGAAGCTCCTCGAGGATATCTCGTCCGTTTGGATTTTATTTCTTTGTTTATCGAAGAGCACAGAACGTGCAAGTACGACTATGTGGTTGTTTACGACGGCAAAGGACCCAGCAAAGTGGAAATGGGCAGATTCTGTGGATCTAAAGTGCCACCACAGCTCCAGGGATCATCCACCGTAATGAGCATCACCATGCGGTCTGACTCCTCCATGGAACTAGAGGGATTTTCAGCACGGTTCAGCACTTTCCAAATCCCTACAGGTAAATGTCAATCCAGTGGAGGTTATATTCGTCTGGTTGGAGGAAAGACTATTTATGACGGCGTAATAGAAATTGAGTCTGATGGGCAATGGGGCGGAATATGTGCTAAGCAGTGGACCCATAGAGATGCCACTGTAGTGTGCCGCCAACTAGGCTTCACTGGACCCGCTTTATCTACAAGGGTTGATGGAAGTGGGCTTGAGAGTCAACAGGCAATCTCTTACATTAAATGTAGGGGAAGTGAGGTGACAGTGCAGGACTGTGACGTTAAAAGGAATGGTACCTGTGCAATGGGACAACGTGCTGCAGTCATCTGCCTGGTTATGGAGTCCTGTGCAGCCTTAAAGAGTGCCGGCGTTCAGGAGTCTGGGACGTTCACCATAGATCCCGATGGCTTGGACACTGGAGTTGATCCTTTCCCTGTGGAATGTGACATGACGTCTGACTCTACAACGGGTATCACAGTGATAGGTCATGATTCGGAGGGGCGAAAGCGTGTGACTCCCTGTGAAGAGGCTGGGTGCTATTCCCAAATCATTAGTTACAATCAGGCATCACTTGATCAACTTGAGGCATTGACGGAGATCTCAAAATCCTGTGAACAATATATCAGCTTGGAGTGTCGCCATATCCGCTTCCTCGGGGAACACTGGGGTTGGTGGGTGTCGAAGGATGGACGTAAAATAAACTCTTGGGGTGGAGCTTCAACTAACAGTGGAAAATGTGCATGTGGAAACAATGGCACCTGTGCTCTTGGTCTTTCCACCTGCAATTGTGATGCAAATGACATTGTTTGGAGGCAAGACGAAGGACATCTGAGGGACAAAACCGTTCTTCCTGTGCAGGAAGTGAGGTTTGGAGACACACAAGATTTACCAATTGAGATGGCATTTCACAGGATTGGTCCACTTCGTTGTCTTGGGCAGAGTTCCCTTGTGCCGGTGCTGGAGTCGTGTGCGGCCTTGAAGGAGGCAGGATTCCAAGCGTCGGGTCACTATGTCATTGATCCAGATGGAGTTGGAACAGGAGTTCAAGAGTTTCAAGTCTTCTGTGACATGACATCTCATCCATCAAGTGCTCTAACCGTGGTGGGCCATGACAGTGAAGGACGCATACGAGTTGCCCCCTGTGAGGGACCGGGCTGTTACAGCAGGAAGATCAAATATGCTGCAGAACTGATCCAGTTGAATGCCCTGACGCTTATTTCGGACTCCTGTGAACAATATGTCAAGTTGGACTGTCGCCACATTCGCTTCATACAAGCCGGCTGGGGCTGGTGGACATCGTGGGATGGGAAGAAAATGTTCAACTGGGGAGGTGCAACCTCCAATAGTGGACGCTGTGCTTGTGGAATTACAGAATCTTGTTCTGCTCCAGGCTTACTCTGCAATTGTGACAGCAATGACCATGTCTGGAGAGTGGATGATGGGATCCTGCGAGATAAATTATCATTGCCCATCCAAGCGGTATACTTTGGTGATACTGAGGATGCACCATTGGAGATGGCCTTTCATACCATAGGAAGACTCCAGTGCAAAGGAAAAGAAGGGACACAGAAGAATCATCAGTCATTATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00193	Xlink	Extracellular link domain	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000538	Domain	Link domain	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR050841	Family	Developmental metalloproteases and endocytic receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24251	OVOCHYMASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005540	Molecular Function	hyaluronic acid binding	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-