Gene detail

Detailed information of XP_032896621.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032896621.1	RETINOBLASTOMA-BINDING PROTEIN 6	NC_045977.1	24244962	24312549	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032896621.1

ATGTCGTGTATACATTACAAATTTTCTTCTAAACTGAACTATGACACGGTCACTTTCGATGGGCTTCATATTTCTTTGAGCGATCTAAAGAAGACTATCATGACCCGGGAGAAGCTGAAGGCAGCAGACTGCGATTTACAAATCACCAATGCACAGACTAAGGAAGAATATACAGATGATAATGCTTTAATACCCAAGAATTCATCTGTCATTATAAAAAGAATTCCCATCGGAGGTGTGAAATCTGCTGGCAAATCATTTGTCATAGATCGTTCTGAACCAGCAAGTGGGACATCGAAAGCAATTGATGACTCTGGAACCTCTATCTCACTGGCCCAGCTTACAAAGACGGCCAATCTGGCTGAAGCTAATGCCTCCGAGGAAGATAAAATTAAGGCCATGATGACTCAGTCTGGTCAAGAATATGATCCAGTGAACTACATGAAGAAACCTTTGGGTCCTCCTCCACCAACATATACTTGTTTTCGTTGTGGAAAACCAGGCCATTACATTAAAAATTGCCCAACTAATGGGGACAAAAATTTTGAAGCTGTGCCAAGGATTAAGAAGAGCACGGGCATTCCCCGCAGTTTCATGGTAGAAGTTGATGACCCAAATATGAGGGGTGCAATGCTCACCAACACTGGGAAATATGCCATACCTACAATTGATGCAGAGGCATATGCACAAGGCAAGAAGGAAAAACCACCATTCTTGCCAGAGGAGCCTTCATCATCATCGGAAGAGGAAGATCCAATTCCCGATGAACTGTTGTGCCTTATCTGCAAAGATCTCATGACGGATGCTGTTGTCATACCATGCTGTGGAAACAGTTATTGTGATGAATGTATTAGAACATCACTACTGGAATCTGAGGAACATACTTGCCCTACCTGCCACCAAACAGATGTTTCTCCAGATGCTCTAATTGCAAATAAATTCTTAAGACAGGCTGTTAACAACTTCAAAAATGAAACCGGCTACACAAAAAGATCTCGTAAACAGCAGCTGACCCAGCAGCTGACCCAGCAGCAGCCACGGCTACCTTCTCTTCCAGTTCAAAATCAGCTGCCCAGTCTGAGGCCATTGCATTCCATCAACCCTCAGACTGTTTTGCCCTTAACTAGAACAGCCATCTCAAAGTCGGCAGATCTCCCACTGACTAGTGCTTCTGCAACTGGGCAGGTTTCTGTTGCTATCTCCCTTCCGAGTGCAGCTTCCGCCCCAGTACGTGCTGCTTCTCCTGCAAAAGGAAACCGAGATTCCTCTGCTGCCAGTATCCCTGCTCCAGACGTATCAACAGTAGCTGTTCACCTTCATCAGTTACCTTCAAAACATGAGGAAGGAGATATTCTGGAAATTGGCAAATCCACTGTGACCGTTACCTCTGGAATAACGACTGCCAACCCATCCATGCCTACAAGCAGCACCTCGGCACATAAGGGTTATCAGGTTCCTGTTCTTGGTCATCCTGCTTCACATGGACAATCCATACCTACAACAGGTCAGCCAATGAGGACAAGTGGTGTTCGACCACCGGGAAACAGATCAGGCTGGGAACTACCATCCAACAGAGGGCATCATAGTGATCGGATTCCAAGAAGTCGAACACAGGGAATTACCAACCCTCCCCCTGTCTATGTGCCTCCCCCAACTCTCTACCCTCCTCCACCTCACCCAGTTCCTCTTCCACCAGGGGTGCCTCCCCCTCAATTTCCTCCACAGTTTCCCCCAGGCCAACCCCCACCTACAGGATTTAGTGTCCCTCCCCCAGGATTCCCTCCAGCACAAGCCACAATATCTGCCCCTTGGGTACCGCCTGCTACTCCAGCAGCTCCTGCCAATGTCATACCAACCGTAACACAAGTGCCTCCACTGTCCAGGGAAGAATTCTACCGGGAGCAGCGACGGCTAAAAGATGAAGAGAAGAAAAAGTCAAAGCTTGATGAGTTCACCAATGATTTTGCTAAAGAGCTAATGGAGTACAGAAAAATCCAAAAGGAGCGCAGACGTTCCTACTCCAGGTCCCGGTCACGTTCATACAGTGGATCATCATTCAGTGGCAGCTCCTACTCGTATTCCAAGTCGAGATCTCATTCCTCACGATCTTATTCAAGATCAGTCAGTCGATCCCCAAGTCGTTCCTACTCAAGATCACCTTCATATCGAAGAGGCGGTGGAAAGAGTAGGGGTTATCGATCAAGATCCAGATCTCGTGGGTTTCATAGGTCCAGATCTAGGTCACCATCTTACAGAGGATATCGGTCTCGTTCCCGATCTCCAAATTACAAGCCCCATTCTCCTTACAAAAGGAGTGTTCCACAAGGTGAAAATGAGCGTGAGTTTTATGATCGTTACAGAGAACCACCACCACCGTTTGACTACAGAGAACTATATGATAGACCTCGTGATCCAAGAGATTCTTACGAAAGAGAGCGCTACAGAGAATGGGAGAGGCGATGCCGAGCATGGTATGAATATTATAAAGGTTACAATGGTGGTAATCAACCACGACCTCGTTCTCCCACAAATAAGGACCATTTGTCTCCTGAGCGCTTTGTCCCACCTGGCACCAGGCGTGACATTTCACCTCATGGTCGGGGCCGCAGGGACGAATATCCAACAGAGCAGTTACCTCGGGGCCGTAATGTAGGTGGTGCCTGCAATTATCCAGAAAAGTTCCCTTACAGAGAGACTCATGGTGTAAAGGAACTGAGAGGGTCAAAGGAAAAAGAAGTAACAAACCTTCGTCCTGACTCGAAAGGTACAAAGCACAAAAAACACAGGAAGAAGAAAAAGGATGAAACCGATCCAGTCAGTAATCCGGAGTCTTGTCGAGATGCAAAGAAGGCTGTGGAAACGGTAGGTGACGATAGCAAAGGAGCTGCCTTGTTTCTGCCACCCAGCAGAGACGATGCCACACCAGTGAGGGATGAGCCTATGGAAGGGGAATCAGTTGCTTATAAATCCATGTCTGACAAAGACAGGAAAGAAAAATCTAAATCTAATAAAATGGAAAAAGTGAAGCGGAAAGCAGAGAGCAGCATGCCCAAGAAAGAGTCCTCTGGTAAAAGTGCCAAAGCAGCGCAAGAGAAGCCGCCAGAGAAAGAGCGGGATAAGTCACCTCATAGTGAGCTCAGCATTAAAAAAAACAGGGAGGAATGTCCTGCCAAGGTCGAGTGTGTGAAAGTCCAGCCACTACCCAAAAGCGAGAAGTTTTTTCTGCCCAGGAAGCTGCAGCTCAAACTGGGCAGAGAGTACAAAGAAACAAAACCAGCAAAGGAGGAAAAGCAAAGAAAGGATTATCCCAGGGAGGAGACAAAACATGAGAAGCACGATAAAGCAGTCAACCGGGATGAAAAACTGAAACGGACAGTCAAAGCAGATGAGAAGCCAAGGCAGCCAGAGGCAAAGGCTGACAAGCGTAAGAGGAAAAGTGATGAAAAAGTGGCAGACAGAGAGCTTGGAACACCTCCAACTAAATCATCAAAAGTAGAAATATCCGAGGCTGCAAAACCTTCAGCGAAACCAAAGACCACGTCTGGTACTGAGAAAGCAGCCAGAGATTTTGTAGAATCATCTTTTGAAAATGAGACGGTCACTCCAGCAAATCTTCCAGTGAGGAAGATCAAAATAAATAGGGAGAGTGGAAAGAAGATTGTAAGTGGAGAATCTCCAGCTGCTCCGGAGGAGGCACCTGAGTTATCGGAGGTCAATGGCGGAAAATCCAAATCGGACAAAGTGAAAACCAAGGCGAGGAGGAAAGTGGCGGGGAATGAGATGACTGGTTCAGTCCTGGTAGATTATACAAGCACCAGTTCTGCAGGAGGGAGCCCCATGAGAAGAGCTGAAGAGAAGTTGGATGCAAAGAAGACGGTGATTAAGACTATGGAGGAGTACAACAGTGATACCAGACCCCCAGCTGAAGATGAAATTGTCATTGTCCAAGTCCCTCGATCCAAGTGGGAGAAGGAGGACTATGAGACAGATGAAGATGAAGGAAGGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTAAACCTTGTAAAACTTGCCAATTCTGGGCAAGGTGTGAAGCCTACAAACCCAACAAAGCAAACTGATAAAGATGCTGTTCCTGCTGAGAAACCTCAAAAAAACATTAAGGATCTAAATGTGGAGGAGCCTCAGCAGGATGCTGTAACACCTGGAAAAAGTGTGATGCTGAATGAGAAAGTTGCAAAGATCAAAGATAAGGAGCAAAGTACGATGGACAGAGAGGTTTTGGACAAGAAGAAAGCAGCTATTCAGCTTGACAAGCCAGCGGTTGCAGAGCGGGATATTGAGGCAGCAAATGGAAAGCATCTTGCTTCAGCTGCAAAAGAGCGGCAGGTTGAAAAATTAGAGCCAAATAACCGTGGTGCCTCAAACAAAGATTTGATTCCTAACGTTGACAGTAAGACAGACGGCATCAACAGGCACATCCCACTCACCAAGCAGAGGGAGGAGCGGGGCCGCGATACAAGGAGGCGAGATTCCCCCAATAAGGGTGAAGAGCTGACACATGGACAAAAGGGAAGAGAACAACAGACAGAAAGCAGAAGAGGCAGTACCGAACCCAGGAAAATCGATCACCATCCTGAGAAAGACAGGAAACCACAAACGACCCCAAGAAGTGGATCGGAATCGAGGTCTGGTATTGAAGAAGTAAAATCGGTCTCCTCCAGCCGAGGCAAGGAAAAACCTGCCTTTGAAACACGGAGCAGCAAGGACAGGCAAGTAAGTGGGAATAAGTTGGCCCATCAAACTGAAATATCAACTGAAAAGAATGAGCAGGAGCTTTGTGTCGGGCGGGGTGACAGGGATCATGGTCGCCCCCGGATGCCAGGTTCTCTCTGCCGTTCGAACCGACTCTCCCGGCACTCCTTGGATCTGGCCAGAGAAACAGACGAGGCTGCCTTTGAACCGGATTATAGTGAAAGTGACAGTGAAATTGAAGCAGAGCATACAGTAAAGGATGGAAAGGATACAAAACAGATCACAAATGAACTGACAGAGGTCAAAGGTGTGTCTGTGGGCTCCAGGAGTAGTGTCCCTAAAATTCACACCCAAAGCAGCCCTAGTTGCAGCCACAGCCCAAGTGAGAGTCAGACACGCAGTCACAGCAGCAGTGCCAGCTCAGAGGACACACAGGATAGTAAGAAGAAAAAGCGAAAAAAGGAGAAAAAGAAGCACAAAAAGCACAAGAAACACAAAAAGCACAAGAAGCATCTCGGTGTTGTATTAGAGCTGGACAAAACTCAAAAACACAAACACAAAAAGAAAAAGTCCAAAAAAGGCAAAGACAAAGATAAGGACAAAGACAGTGACCAAAAGGTCCGATCATCTGTCATTGTCCGAACAACAGAAACGGATTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|DWNN
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564	U-box	U-box domain	Domain	Interproscan
PF08783	DWNN	DWNN domain	Domain	Interproscan
PF13696	zf-CCHC_2	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014891	Domain	DWNN domain	Interproscan
IPR025829	Domain	Zinc knuckle CX2CX3GHX4C	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-