Gene detail

Detailed information of XP_032895430.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032895430.1	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE O	NC_045976.1	12298514	12430385	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032895430.1

ATGCCTTGGGATCTGCAAAGAGGAGCCGCCTGCCCAATGGTGCTTTTTATCACTTGCTTCCTTTTCGCCTTAAAGAAGGCCGCTGCGATTTCTGCCACCGTTAGTGATGACAACAAGATCACGGTGTCGCTCCAGCCACAAGACGTGACCAACGGATCCTCCCTGTATTACGTGAAGATCACGCAGTCCATTAACCTGACCAGCTACAAACTCCAGTTCGAAGACTTCAACCACACCCTCCCTCCTCCCGTGGTCTTCAACGCCTCCTACCATGGCATCTACTACTTGGTCACTCTCCTGACCGGAAGCTCAAAGTCAACCATTAAGCCAGTGCACTTGGTTGCTGTGTTAACAAAACCACTTCCCGTCAACAGTGTAGCAATCTACGACTTCAAACAATCCCCGCAAACCGGGGTCCTCTTCGATATTCAGTATCCGAAGCAAGCCACCAACTTTTTCTCAAGGTTAAAGATAAGCTACTTTGAAGGCAGCCATTATCAATCATATCTCCATAAAGATTTTCTGAAAGGCAAGTTAATTTTCAACACTTGGATACCGGGCACATGTTACAGTAACATCACAGTGCAACTGGTGGGAGAGGCTAATGTTAATAAAGTTCCACTAATGGAGTACAGCGATGTGGGGCATGAACCGAAACATCATCGGACAGTTCCCTATCCCCCGAGCAACGTGTCGATGAAGATAGTGTATGGAAGAAGCCAGCCTAGTAGCGAGCATCCTGCTGGACACGACCAGTCTTCCCTCAACTCCAACAGTACAGTGGCCGAGGGAAGTAGCGCCATTGATACCGAGATCAACGATCTTGCCACCACCAAACCGGTCATGTGGGGAAGCCATAGGTTGTCTGGAAAGCCAGCCGGCTGGGCACGGGAGCTGCAACCAGACAGTAAAGAGACCTCGGGCAGTGGGAGTGATTACTTGGATATAATGAAAGAGGATTCACGGCGTATTGTTTACACCAACACAGACACTCTGAGCTCTGTCGCCAACCTGGAGCCAGTTTGGCTTGTACTCGAGTGGTTGCCTCCAAAACCACCTACAACGTTCGATGGCTTCAACATTTATATCCAGAGGCAAGGGCAGGCTGCTGATGTATATCGAGCGGAAAATACCAGTTATGTATTTGAGCTGGAGCTCAGGGACTCGGGGAGGTACGATGTGAACGTGACCACTGTCAGCTCTGTGGGTGCCTGTCGGACCAGAGAGGGCTCATTCAAGAAACGCTTGACGTTCTACCTCAGTCCTTCTGGGAAATGGTTTAAGGAGGTGACGGAAAGGCCCGGCAATGTTGCGGTGAAGGTGATGAACGCCATGACGGCCCTCGTCTCCTGGACCCAGTCACCGGGCACCAGCTACGATGGAGTCATGTCGGTCGTATCCCTCTCCTGTCGACACCAAGCAGAAGGGCAGAGAATCGAATCTCTTTACTGCTCGAAGGTGAACCTGAGTGGGAACATCATTGACAACCTGATGCCTGGGGCACACTACCAGGTGACGGTCTACCTGAGGAATGGCCCATCTGTCGGACCCCCGTCTCGCCCCGTCACCTTTGGCTTGAACCCATCGGGAGTGAAGAAGCTGCGGCTGTATCCGCTGGGGCCGACGGCGGTGGTCCTGAGCTGGGGCAGACCTTACTCCGTGGTCTTCCGAAAGTACCTTGTGGAGATGTACCACCACGACCCAAAGAACCAGAAGTCTAAGTGGAGAACCATTCAAGATATTCCATTCACAAGTGCCTTATCAACCTCCATGATGGTGACGGAGCTACAACCCGCCTCTCGCTACGAGTTCCGCGTGACCATGGTGTCGTGGGGAGAACCGGAACACAGCTGCTGTGACAGAACCGTGACCAGCTACGTAACAGCCCCGCTCGCTCCAGAGATCACCTGGCTGGAGTATTCCAAGGACGTTCTGTCGGTCAGCTGGAGGTACGGCCATGCCACAACTGGGACATCAGACTCAACGCTCCCGTACTGGCTGGTGATGGCAGTCGGACGCAGGATCATCAAGAAAAGCGTGCCGCACAGTGTCATGACCACTCTGCTCCGACTGCCTCCTGGGGACATTTACAACATCACTGTGGTGGCCTACACAGAAGGCAGCAGTAACGCCTCTGCACCACGAATCATTCAGCTCCAGCCTGCTTCACCCAAGTCGCTCTTCACTGTGAACAGAACGCGGTCATCGGTGACACTGCTGTGGGTGGAGGAAGGAGTCACGGACCATTACAAGGTCATTTGTAGACAGGTTGGATCACGCAAGGAAGGAGAGAAAGAAGAGGCCACTGTGTACACCCCTGTTGTCACGCTCTCTAATCTTATACCATCGACTTCGTACAACTGTAGTGTGACCAGCGTCAGCTACGAACACTACAGCCCTCCAGTTTTCATCACCGTCTCCACAGTTGCAGAGGTCAACTCGAACATGGTGGTGATCTCGGCCTTGGCGATTCTGAGCATCCTGCTGATAGGACTGTTGTTGGCCACGCTCTTCATCTTACGACGTAAACACTTACAACATGCCAGGAATTGCGGAGCGGGAATATTTGTCAACTTTGCCACCCTGGATCGAGACGGGAAGTTGCCCTTTAACTGCCCCGTAAAACTGGACGATTTTGAAATGTATCTCAAGGAAATGGCCAAAGACTCAGATTACAAATTCTCTCTGCAGTTCGAGGATCTCAAGCTCATCGGTCAGGACATTCCCCACGACACGGCAGAGTTCCCAGTTAACCGCTGCAAGAACCGATACACCAACATACTGCCATATGACTTCAGCCGAGTGAAATTAACCTCTCTACAGTGTGATGATGAGTCAGACTTCATCAATGCTAATTACATTCCTGGGTTTAACTCTGCCCAGGAGTACATTGCGACACAAGGGCCGTTGGCAGAAACAAGAAGTGACTTCTGGAAGATGATAATTCAGCAGAAATCGGGCATCGTTGTCATGCTCACACGATGCAATGAGAGGAGACGGGTAAAATGCGACCATTATTGGCCATTTAACGATCAGCCAGTCAGCTATGGAGATGTCACCGTAGAAATGGTCTATGAATCGGAGCCGTTTGATCAGTCCGAGGAGAACCTTCAGTCGGAGTGGATCGTACGAGAATTCAACGTCAGCTATGTGGATGATGTTCGGAGAGTGATCCACTATAACTACATGGCGTGGCCCGATCATGGTGTCCCCACAGCAGACACGACCGACACCATCTTACAATTCGTCCAGTTGGTCAGGCAACAAACAGCAGAAAGACCTGGTCCTATAGTTGTCCACTGCAGTGCTGGAGTGGGAAGAACAGGAACCTTCATAGCTCTCGATCGTCTAATGCAGCACATCCAAGAACACGAGTATGCGGATGTTCTGGGCCTGGTGGCAGAAATGCGAACTTACAGAACATCAATGGTACAGACAGAGGAGCAGTACATTTTCATTCACCGCTGTGTGCAACTGATGTGGAAACGGAAAAAGAAACAGTACGTCAGCAGTGACGTGATTTATGAGAACTGTAGACCGTCGCATTCATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR042996	Family	Receptor-type tyrosine-protein phosphatase O	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47028	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE O	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003093	Biological Process	regulation of glomerular filtration	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0072112	Biological Process	podocyte differentiation	Interproscan
GO:0090090	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan
GO:0098978	Cellular Component	glutamatergic synapse	Interproscan
GO:0098982	Cellular Component	GABA-ergic synapse	Interproscan
GO:1990264	Biological Process	peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-