Gene detail

Detailed information of XP_032892359.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032892359.1	MHC CLASS II TRANSACTIVATOR	NC_045972.1	37358544	37474875	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032892359.1

ATGAAGTGTGGTGTTCCCGCTGGTGGCCACGGGAGCGCCGAGCCGCCGGCTACTGTCTTTGGCAAGATGAGCAGCAGTGGAATCAAGGATGTCCTGGAGAGCAACCATGGTCTGTTGGTGGAATCTCTCAGTCAACATGCAAACAGCGTGATCGAAAAGGCCAAGACCATCTTGAACGTGGAGGAGCAAGAGCTTGTTGACAGCCGAGGAACCAATGAGGATAAAATTTCAACGTTGCTGAAGAGACTGGCTACGAAAGATAATGACACCTGCAAGAATTTCATTGAAATGCTGATTATCACGATGCCCTGCAACTCGTTCCCCATGTGTCTGGAGAACTCACTAATGGCATCTGGAGAAGACACTACTCACGATTTATACCACCTGGAACAGACGGAAACCAGTCCTGATTTTACACAGCACTCTGAAGTAAAATCAGGTGCAAAAGGTATTGGTGGAAATCCAAGAAAAGTCACTTTGCGTAAAGGAAGGAAACGATCTCCAGGACGAGTCGAGAGCCTGCATCGTGCTGTAGTGAAAAAGAGAAAAGCTGGTGAACATAAGAAAGTAACAGCATTGAAATCACGTTCTACAACCAAGTCAACCCAAACCGTGTTAACCCCAGACCCTGAAGAAATGGACCAAACTCTGCATCAATCAGGAGATGAATATTTGAACTTGCCAGCAATTTCAGATTCTGCAGAGGACTACAGAGCATTTATGATACAGACCATCTCCCAGAAATACGTAGCCAGTGCCTCAAAGGAAGAGAAAATGAAACAAGTAACCGTTGCCCAGACGTTACGGAGTCTAAGCATGAACAAACTCAAGGAGAGAATCGACGCCAGCCGGGACGATGTGCTTAGTTCACCTGGGGTTGAGGAGAATGAGGACATCCTTGCAAACCTAGCAGAGTTTCTCAACAAAAATCGCATTACAACTTGCAAGATCAATATCCTACTTGGAAAAGCGGGAACTGGGAAGACCAAGTTGGTACACAAAATTTGTTATGAGTGGACTAAAGGAGCTGTCAGCCAGTTCCAGTATGTATTCTTGTTTGAGTTTCGTCAACTGAACTTAATCAATAAGAACATTGACCTGAGGACCATGTTATTCGACTTGTTTCTCAAACCAGAAAGGAACGCCCATGCTGTGTTTAGATATATAGTAGGAAACCCACAGCAGGTTTTAATTATTTTCGATGGATTTGATGAGTTTGCGTGGAAATCTTCTGTCTGCACCTCCGCTGTTTCCAGCGATCCCAATGCACTACTGTCAGTGGGACAATTATTTTCCAGCTTGTTTAACGGGACGATGCTCCCTGGATGTACAGTTCTGATCACTTCCAGGCCCAAAGACATCCTCTGCTTGCCTTTGGATGGTGTGGGTTATGTGGGGGAAGTCTCGGGGTTTAACCAATATAAGATTGAAGAATATGCCAGCCATTTCTTTGAAAGCACTGAGCACCGTTGTAAGGCCATATCACACTTGGAAAAGAATAGGAACATTTTAAACATGTGCTACATCCCTGTCTTATGCTGGGTTGTCTTCCTGAGTCTTGAACACTTGTTATCTCAAAGTCACTTGGAACCCAAGCTACCTCATACAATGACTCAATACTACATCAAGATGCTCACAGTATTTTTAAGCAAAGGTGCCAAGGTTACAGAGGCCCCGGGCCATGATGAAAACTTGCTGCTCAACAAATACAGGGATGAGATTCATGGTTTGTGCAACCTTGCTGTAAAAGGACTCCGGGAGAGTAAGTATTTGTTTTATTTAAAAGATCTACTTTCTGAAAAGGTCTCCAAGTTTGCTTCCTCATTTGGATTTCTTTCCACTTTCGAGGTGAAAACTATTGACCATAACCAAGAGATCGGATACGCCTTCGTCCACCTGACACTTCAGGAGTTCCTCGCCGCACTTCACCATCTCATCGACAGCCAGACGACGCACCAAATGTTGAAAAGCAGGCTTTTCCTCAAATCAAAATGGGCATGGAAGATCGACGTGAAGCATGAGTTTACGGATGCTGTCCACGTGTTCCTGTCTGGCTTGGCTTCGAAAAGGTGCAAGCAGTTCCTCAGCGTCCTGGCAAACAAGAATGAAACGTGGGTACAAGAAAAGCAGAAGGCTATCTTGCTGAACCTGCGCAAGTTGGCCACCACCAACCTAACGGGGCCAAAAATAATTGAGCTATGCCACTGTGTGTACGAGACACAGGACCATGAGCTGGCACGTGACATTGCCACACAGTTAAGGTACAAGTTCGAGCTGCGCAACTTCAGGCTCACGCCAGTGGACATGACCGCCCTAACTTTCATTATAGATAGCGGAACCAGCTCCGCCTCTGTGGATATTGGAGGCTGTGCCCTGGATCTAGAATGTGTCTCTGTCTTGGGCACTTGCAAGAACTTAGAAATATTAGTGTTCAAATGCAGAAAATATGGAGACAAATTTGCTCAAACTTTATCTGAAGTTATTCCCCAAATCAGCGGCTTGAAGAAGCTAATCCTTACATCTTGCAACATTGGTGTGAAGGGAGCAAGCCTCTTGTCTTCTGCACTACAGTTCTGCCAGCAGTTGGAAGAAATAAAGCGATCTGCTTGGCACCATTGTGCTCACCCTTGCCTACTTCTGTTTAATTCCAGCTTGCATGATAATGAGCTGGAGGAAGCAGGGATAGAGGCGATCGTTAACGTGCTTCCTGAAATGAGAAACCTGAGAAAAGTCGAGTTGGGTTACAATAACTCCAGCATTGAGGGTGTTCTTCATATTGCAAATGTTTTAAGGACCTGCTCCAACGTCCTGGATATCCAAGTCAGTGACGGTGGTTTTATGGCAACAATTCGATTTTTAACGGACTCAACACCCATCCCAATGGACAGGCCTCCCAAATCTGTGTCTCCAGTGGAACCCGAAGGCAGTCAAGAGACAGTTCTAAGCAATCTCAGTCTTGTGAAGTGCGAATTAACAGAGAAACATGTGCACACTCTCTGCACAATCTTGCAACATGGTCCTCAGCTGGCATCTCTCGATTTGTCTCGCAACGAATTGAAGGACAACAGCTTAAGAAAACTTGTTGAATTCCTTCCAGAGTTTCGTATTTCTAAATTAATTAACCTCAGCAACAATGATTTCTCTGCAAATTGCATTCTCTGCTTGGTAACAGTGCTGAAGGAAAACCCCAACGTGCTGGAAATAGAAGTGAGCCTGAAATGTCCCCAGACTGTACTAATTAAGTTTACAGAGCACCGTGAAGGCACTGACTGCAGAGATGAACGAATTGTCCAGCTGATGGATTTTAGACTGAGCAGCACTGGAGATTCAAGGAGCAAACCAACACGGTTGAGAAAATTAAGTCTGACCAGCTGTTGCTTTCAACCAAAGCATTTGGAGGAATTGATCTGCACACTTGAGAATTGCAGTGATCTATCAGAATTAGACTTATCTGATAACTCACTTGGAGATAGAGGGTTCAGCAAGTTAGTTGAGTTGCTACCAAAGCTGCATGTTGGAAGACTCATCAATGTCAGCAATAACTTCATCACAATGACTAGTGTCTTTTGCTTGACTAAATGCATGAACAAGATCAGAAACCTAACAGAGGTGGCAATAAGTTTGGGGAAGCGTGGAAAAGGATTCATCAAGTTCCATGGGGATCACAGATTTCAAAAGGAAAGGAAAGATGGAAAACAAGACTTATGTCTTCCGAAGAAAATAAGCCTCGAAGAGTGTGAAATAGATGGTGAGACCATGAGGCAGCTCTGCTTGATCCTTAAAACATGTTCTGCACTTACAGAGCTTGACTTATTAAATAACGCACTGAGTAATGAGGCCATTGCTGAGCTGCTCCATCACCTCCCAGATCTGCAAGACTTGGAGACTTTGAATATCACGGATAACAGCATCCCATCAGACACTGTTCTTCTGCTGGCAGAGTCTCTGAACTTCTGTGAAAATGCTCAGGAAGTAGAAGTGAGATCAAGTGGAAGAGCTTCAATAAACTTTGCAAAGAAAGGTGGCAGGCTTGAAGGAAGCAGGAAGAAAGCAGGAGGTCCATGCTCGAGGATTCTCAGCCTGAGGGAGTGCCATCTGCATAAAACGAGTATGGAACAACTCTTCAAGATTCTTGAGCGCTGCAAGAACCTGGCAGAAGTAGATCTGTCCTGCAACTTTCTCGAAGATGAAGGATTGCGGAGTCTGAGAGATTTCTTACCAAAGCTGCACTTTTTGAAGCTATTAGATGTGAGCAACAACAGAATCTCCCCAACTGGCGTCCTGTACCTGGTGGAATCTCTCAATACATGCAAGAATGTGGTGGAGGTTGAAGTGAGCTTGGCGTTAAATGGAAAATCTTTTATAAAATTTGCAACGAGGTGCGAAAAGAAGGTGTGCAGCGTGAAGGAATGCAACTTGAAAGGGAAAGACCTGCTGAAATTCTTCTCCGTTGTTGGACAGTGCACCCATTTGACAGAGCTAAAGCTCACCAGCAACGCAATGGGGGACGAAGACATGAGAAACTTAGTGGAGGTCGTGGGCAATCTCAGACACCTGGAGGAACTCGATCTGCAGAAAAATGGGATATCTCTCACTGCTGTAGAAAACCTTTTTGTGGCACTGAAATATTCTCCTAGAACACTAACAGTGAGGTTTGAAGAACAGTGGATACATGGTGCCGATGCTGTTAATCTTGTCATGAAATGTGTCCAAACCCAGCTGAACACTGCAGAAGTTAGGATAAAGAAGAATCAAGCTTTGATAAAGCTGATGGCCGATGGCTGGGAAACCTCTGATAGCACCAGAATATTCAATGAGGTGACCTATCCTTCCCTGGGGATAATCAGTTTGCAACATTGCGGCATGGAGGCACTCCACCTCGTACATCTCTCATCCATCATTAAACGATGTCCCCATCTAATGGAGCTCCATTTATGCCAAAATAACTTTGGCAACGAGGGGGCAGAAATACTTGCTGAAGTCCTTCAGGTTGTCCGGGGGCTGAGGAATCTCAGCCTGGAGTCGACCAACATGAGCAACACAGGGATGATGACACTGATGGCAGGTCTTTGTAAATGCCACAGCCTTGAGGAGCTAGACTTGTCACACAACGAACTGGGGGAGGAGAGTGTCAGTGAACTGGGAAAAATCCTTCCGTGCTTGGAACAACTGAAGATAATCAATCTGAAGTCTAACTCCATTGGTTGCAAAGGGGCAGCGGAGCTAGCAAATGGACTGAAATACAGCACTGTAATGGGAGAAATCAATTTGTCAGACAATTGTATGGAGAATGTGGGAGCAATGAAGCTGGCTGACGTACTGCCCATTATGAAGAGCTTGAAGATACTGAACCTGACCCAAAACAACATCACAGCAATTGGTGGACAGAGACTGGCGGAAGCCCTCAGACAGTGCCCATCAGTGGAAGAGGTTGATTTGTCCAGGAACAAGATTGGCGATCAAACCGCAATGGAGTTAGCCAAAGCCCTTCCAAAGATGCTTCATTTAAAGATTCTGAACCTTCACTGCTGTGGCCTTGGTACCGGTGGTGGGTTAAGCCTGGCACAGGGCCTTGTGTTGTGCCCAACCCTCCAAGAGATAAGCTTAGCTGAAAATAACATTGGGAATGAAGGAGTATCGGAGCTTGCGCTGGCACTGAGAAGCTTGAAGTCGTTAAAGAAGCTGAGCCTCCAGTTGAACAGGGTGGATAACAGCATGGCCAAGGAGCTTGCAACGGGGCTTGTTTGCTGTCTCGCTCTTGAAGAGGTCATTTTGTCCTGGAATAACATCAGTGACGAGGGGGCAGCCTGGCTGGCCGAGGTTCTGCCCAGAATGCGGTGTTTAAAAAACCTAGACCTGGAAGGGAACAAAATCACGTCAGCTGGAGCCGAGAAGCTGGCAGCTCGGCTTTGGCAGTGTTCCTCGATTGAGGTCATTCGATTGTGGAAGAACAATATACTCAAGGAGAGAGCTCGGAGCCTTTGGGAACGAGACTCAAGACTACATATCTTCCCGGTTTACAGCAGTGCTCTATAA

Transcript

Protein

XP_032892359.1

MKCGVPAGGHGSAEPPATVFGKMSSSGIKDVLESNHGLLVESLSQHANSVIEKAKTILNVEEQELVDSRGTNEDKISTLLKRLATKDNDTCKNFIEMLIITMPCNSFPMCLENSLMASGEDTTHDLYHLEQTETSPDFTQHSEVKSGAKGIGGNPRKVTLRKGRKRSPGRVESLHRAVVKKRKAGEHKKVTALKSRSTTKSTQTVLTPDPEEMDQTLHQSGDEYLNLPAISDSAEDYRAFMIQTISQKYVASASKEEKMKQVTVAQTLRSLSMNKLKERIDASRDDVLSSPGVEENEDILANLAEFLNKNRITTCKINILLGKAGTGKTKLVHKICYEWTKGAVSQFQYVFLFEFRQLNLINKNIDLRTMLFDLFLKPERNAHAVFRYIVGNPQQVLIIFDGFDEFAWKSSVCTSAVSSDPNALLSVGQLFSSLFNGTMLPGCTVLITSRPKDILCLPLDGVGYVGEVSGFNQYKIEEYASHFFESTEHRCKAISHLEKNRNILNMCYIPVLCWVVFLSLEHLLSQSHLEPKLPHTMTQYYIKMLTVFLSKGAKVTEAPGHDENLLLNKYRDEIHGLCNLAVKGLRESKYLFYLKDLLSEKVSKFASSFGFLSTFEVKTIDHNQEIGYAFVHLTLQEFLAALHHLIDSQTTHQMLKSRLFLKSKWAWKIDVKHEFTDAVHVFLSGLASKRCKQFLSVLANKNETWVQEKQKAILLNLRKLATTNLTGPKIIELCHCVYETQDHELARDIATQLRYKFELRNFRLTPVDMTALTFIIDSGTSSASVDIGGCALDLECVSVLGTCKNLEILVFKCRKYGDKFAQTLSEVIPQISGLKKLILTSCNIGVKGASLLSSALQFCQQLEEIKRSAWHHCAHPCLLLFNSSLHDNELEEAGIEAIVNVLPEMRNLRKVELGYNNSSIEGVLHIANVLRTCSNVLDIQVSDGGFMATIRFLTDSTPIPMDRPPKSVSPVEPEGSQETVLSNLSLVKCELTEKHVHTLCTILQHGPQLASLDLSRNELKDNSLRKLVEFLPEFRISKLINLSNNDFSANCILCLVTVLKENPNVLEIEVSLKCPQTVLIKFTEHREGTDCRDERIVQLMDFRLSSTGDSRSKPTRLRKLSLTSCCFQPKHLEELICTLENCSDLSELDLSDNSLGDRGFSKLVELLPKLHVGRLINVSNNFITMTSVFCLTKCMNKIRNLTEVAISLGKRGKGFIKFHGDHRFQKERKDGKQDLCLPKKISLEECEIDGETMRQLCLILKTCSALTELDLLNNALSNEAIAELLHHLPDLQDLETLNITDNSIPSDTVLLLAESLNFCENAQEVEVRSSGRASINFAKKGGRLEGSRKKAGGPCSRILSLRECHLHKTSMEQLFKILERCKNLAEVDLSCNFLEDEGLRSLRDFLPKLHFLKLLDVSNNRISPTGVLYLVESLNTCKNVVEVEVSLALNGKSFIKFATRCEKKVCSVKECNLKGKDLLKFFSVVGQCTHLTELKLTSNAMGDEDMRNLVEVVGNLRHLEELDLQKNGISLTAVENLFVALKYSPRTLTVRFEEQWIHGADAVNLVMKCVQTQLNTAEVRIKKNQALIKLMADGWETSDSTRIFNEVTYPSLGIISLQHCGMEALHLVHLSSIIKRCPHLMELHLCQNNFGNEGAEILAEVLQVVRGLRNLSLESTNMSNTGMMTLMAGLCKCHSLEELDLSHNELGEESVSELGKILPCLEQLKIINLKSNSIGCKGAAELANGLKYSTVMGEINLSDNCMENVGAMKLADVLPIMKSLKILNLTQNNITAIGGQRLAEALRQCPSVEEVDLSRNKIGDQTAMELAKALPKMLHLKILNLHCCGLGTGGGLSLAQGLVLCPTLQEISLAENNIGNEGVSELALALRSLKSLKKLSLQLNRVDNSMAKELATGLVCCLALEEVILSWNNISDEGAAWLAEVLPRMRCLKNLDLEGNKITSAGAEKLAARLWQCSSIEVIRLWKNNILKERARSLWERDSRLHIFPVYSSAL

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF17776	NLRC4_HD2	NLRC4 helical domain HD2	Domain	Interproscan
PF17779	NOD2_WH	NOD2 winged helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001315	Domain	CARD domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR041075	Domain	NOD2, winged helix domain	Interproscan
IPR041267	Domain	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47189	MHC CLASS II TRANSACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0045345	Biological Process	positive regulation of MHC class I biosynthetic process	Interproscan
GO:0045348	Biological Process	positive regulation of MHC class II biosynthetic process	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-