Gene detail

Detailed information of XP_032889053.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032889053.1	ZINC FINGER AND SCAN DOMAIN-CONTAINING	NC_045969.1	40749549	40785652	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032889053.1

ATGGATGAAGATGTAGGAGGGCTCGACCTGCAGCAACAAGAGCCCAAGGTGATTTTTGATAACACAGTTCACGAAGTGACTTCTGAAGATATCGATGGGCACCATATTTTTGTGGAAGTTCAAGACACTATCTTTGTAGATTCCAGTATTGCCCCTGGATCCCACTTTGTCTCTGATGATACAGACTCTGTCGTAATACAGGATGCCATTGAAGATGTTGTGACTGAAGATGTCCACTGTCCTGATATTATTGAGGAGTCAGAAACTATAATTATTCCTGAGCAAGTACTGGACACAGATGTTGCCACAGAGGAAAATTTGACCACAATTCCTGAAGACGTTTTGACGTCTGATATTACCTCGGAGGCGATGTGTGTAGCTGAACATGTATTGACAAGTGAGTCGATACATGTGTCTGATATGGCGACAGATGAACACGTTGCAGTCACAGAAGCTGAAATGGTCGCAGACACCTTGTTACCAGATGTAGAAGAGGTTCTGGTGGCGGACTCTGCTGTGGAGACTGTGATCGATACACACAGTTTACATGTTCAGAGGCAGGAGACGGTTCCTGTAACCATCGAGGCGCCTGTAGGAAATAAAGGCACTAGAGAAGATTATTTAATGATTTCCTTGGATGACGATGGAGGAAAGGTTGGTCATGGAGGAAATGGTGAGCTGAAAATTGAAAGTGGACTATCAGCACAGAGTGAACATTTAAAAGAAGATGACACCTGCGGTGATGTTATTAAAGTTTACATTTTCAAGGCAGATGATGGCGATGATGATTTGGGTGGAACCGTGGACATCGGTGAAAGTGAAGCTGACAATGATCATGGAGTCGGAATACTGGAACAGGGCAACATGGGCAGAATATCACGAGAGAAAATGGTTTACATGACTGTTAATGATCCTAATCAGGAGGATGAGGATATGATGAACACAACACAACATGAGGAGAACTGCTATCTTCAAGCAAATGAAGTTTACATGGAAGTCATAGTTGGGGAAGATGAAGCAACGGTGGGCCATGAACAGCAAGTTGAAGATACTGATATGAGCAAAACATTTGTTCCTGTTGCTTGGGCTACTGCATATGGTAACAGTTCGGATACTGTGGACAAGAATGAAACTGTCAGCCACCTCCTACAGGCAGATGGAACAACTGAGCTTTCTAGGCTGGTAAAACCAAAGTCAAGGAAAAGGAAGAGACTTGAAAGTAGACAGTATCAGACAGTGATGGACAGGAATTTGCTGCGTGCTGACCACCAACTGAAGCTTCTGTCTCCAGCAATCATCATAGGACCTGATGGCCATCCTATAACTGTTTATCCATGCATGATCTGTGGGAAAAAGTTTAAGTCCAGGGGCTTTCTGAAAAGGCACATGAAAAATCATCCAGAGCAGCTGACCAAGAAAAAATACCAATGTACAGACTGCGATTACACTACCAACAAGAAAACTAGTTTACACAACCATCTGGAAACCCACATGCTCATGAATAAAGTAGAGAAGACCTATGAATGTGATGAGTGTGGCAAGAGGTTTACTCACCCAGCAGCTCTGGTTTCCCATAAATTGGTTCACCAGGAAAAGGGAGCCACAAAGATGCACAAGTGCAAATTTTGTGATTATGAGACTGCAGAGCAAGGGCTCCTGAACCGCCACCTCTTGGCTGTGCATAGTAAGAATTTCCCTCACATATGTGTGGAGTGTGGAAAGGGTTTTCGCCATCCGTCAGAACTGAGGAAACACATGCGAACCCACACTGGGGAGAAACCCTACCAGTGCCAGTACTGTGACTATAAGTCAGCAGATGCCTCCAACCTCAAAACCCACATGAAGACAAAGCACAGCAAAGATCTGCCATTCAAGTGTGAGAACTGTTTGATGACATTCACGGATGCCAAAGAACTGCAGAAGCATGCGGCCATTCATCAGGGACACAAAACCCACCCGTGTACACATTGCGATCACAGAAGTTCCAACTCCAGTGATCTGAAGCGCCATATTATTTCAGTCCACACTAAGGACTATCCTCACAAGTGCGAGGTATGTGACAAGGGTTTTCATCGACCCTCGGAGCTCAAGAAACACATGTCAACTCACAAGGGTAAAAAACTGCACCAGTGTCGGCACTGTGACTTTAAAATTGCAGATCCATTTGTTCTTAGCCGACATATTCTTTCAGTCCACACCAAGGATCTGCCGTTCAGATGTAAACGTTGCAAAAAAGGCTTTCGTCAACAGGTTGAGCTCAAGAAGCATATGAAGACCCACAGTGGCAAAAAAGTTTATCAGTGTGAGTACTGCGAGTATAGCACTACCGATGCATCAGGCTTTAAGCGACACGTTATTTCCATTCACACAAAGGACTATCCCCATCGTTGCGATTACTGCAAAAAGGGCTTCCGAAGGCCTTCAGAAAAGAACCAACATATTTCTCGACATCACAAAGACGCTGTTTTGGTGGAAGGGTTGGCATGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF04704	Zfx_Zfy_act	Zfx / Zfy transcription activation region	Family	Interproscan
PF13909	zf-H2C2_5	C2H2-type zinc-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006794	Domain	Transcriptional activator, Zfx / Zfy domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-