Gene detail

Detailed information of XP_032888709.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032888709.1	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	NC_045969.1	24494218	24582076	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032888709.1

ATGCAGCGCACACGCAGTGGTGGGATGCCATCAAAATGTGGATTTTGTAAGCGGATTAAAGAGGACACATGCAGTGGAGAAATGCTCTTTTCTCAGGATGGTCAACTGGTAATTCACCGCAGATGTCTGCTGTTTTCGTTTGCACCCGTGATATCCAAAATACCCAAGAATGAAAACCTTTGTGGGATTTCGATACAAACTATTCAAAAGAAATTGCAAAAAACTGCCAAAATGAAGTGCACTCACTGTCATCGGTCTGGAGCTGCTGTTAAATGTGCTGTAACCAACTGCAGGAAGGTCTATCACTATCCCTGTGTGACGAGTGATAATGGTGCAATCAAGGAAAATGAAATCCGTGGGGTTTACAGGATTTGGTGTCATAAACATAAAACTGAACAGAAATTAGTAGAAGACAGCTCCTTTGAACATGCTGAAGATGTTCAGGACACTGTACAACCTAAAGGCGAAATGCTGGAACAACAGGAAGGGCAACATCTCTGCAGCAAAAAGGCAGACCCTCAGGGACATTCTTCTTGTATGCAGACTGAAATTCTTATGAAATGTGAAGTTAAGAACTGCTCAAAGACTTGCCACTTGGGATGTGCAACTTCTAACAACATAAAGCTCATGAAAAATGTTGAGAAAGGAGTTGACAGTGGTTCTGATGAAGATCAAAATGATAAGAAGGCCCTTGGTTCAACTTCGAGTAACTACTGCATGGACAACGGAGATGAAGAAAGTTGCAATGATTGGGAAGATAACCACAAATGGAAAATGAGAAATAAAACAAAAGGTGAAGGAAGATTGAAAAAATCCCAGAAACATCATTCCTGTTTATCAAATAATCATGGAACCTTTGAGGGTTCCAATGTGTCCAAACCAACTTTCCAAGAACTTGATTCTTTCAGTTGCAACAACAGGAATTCCAACAAAATGTCAAATCTCCCTGAGAGAGATTATTTGGAGCACAGTGATATGAACACTGAGAAAATTAAAGGGAATACAGCAGAGCTCTTGCAGTCGAAAGAAAATCCTGCCAGAGTAGCTGAGAGTGAGGAAAACACATCCTGCATGGATATCCACAATCTTGAATATTTGAAGGCTTTAAATTTGCTCAACAAAGCTGGAATCTACAACAACTCACTTTCACCTGACACAGCAGAAAATGAAGAAAGGTTTCAGTTGAATTGTGAGGATATTTCGGAAAGATTGATAAATACTGAAGAAATGGAAGCAGAATTAGTATTGGACAATCCCCTGTTTTTACAAACATCAGTTATTAAAAGTCTGGCTTCCTGCGCCACCTGCCCATCACCTACAAAGGAATTAAATTACCCAAATGTTCCTGATCGGTTAATACTTCATCAGCGTAAGTGCAATACCATGTGTATCGCTGGAGTAATGCCTCAAACTTCTGATCATTTCAAAGGGGAAAATCCACTGAAAATTCCCATACTCTGCCGGTTTAAAAGAAGACATGCAAAACTGCACTGGGATACTGAGGTTTTGGAGCCTCCACATGTCTCTTACAAAGCTCCTTGTGGGAGAAGCTTGCGGAATTTCAAGGAGGTGCGCAATTACATTTATGAAACGCAGTGTGGCTTTCTTTTATTGGACTTTTTCTCTTTCAATACATACATTCAGCTTTCAAGAACATTTCCTTGCAAGAACCCAGTTGTTTATGAAGCTGATATAAGCCACGGTATAGAACCTGTTCCAGTTTCTCTGCACAATGCGATTGACATCTCTACGCCAGAGCACTTTAAATACAGAAAAGCACGGTTGCCTCATGGATGCCTTATTAGTAATTCATCAGAGATGTTCCAACAGAAATGCAACTGCACAAATGGCTGCAGTGATGGGTGTGCATGTCAACAGCTGACAACCAAAGTCAACAAAAGATTTAACAAGGCTTCTGGGTATGAATACAAGCGTCTTCTGCAATGTGCACCTTCTGGGGTTTACGAATGTAACAAGTGGTGCAAATGCGACAAAAGAATGTGTGAAAACAGAGTTGTACAACAGGGCCTTACAGTTCGACTGCAGTTGTTTAAAACGCACAAAAAAGGCTGGGGAGTCCGTTGTATGGATGATGTTGATAAAGGAACCTTTGTGTGTTGTTACACAGGTCGAATACTAAGGACCACAAATGAAATAGAGAGCCAAGAAAATGAGAAAGCCATTAATGTTAATGATACTAATTCAGGTGGCAGCAAAACAGCAATGACCTTCATCAAGAGAGAAAGGAAAGACTCCAATTCGGAACCTGAATGTAAACTATTACAAGAAACGGAAGAGACAAATACAAGTGTGAAGAAGGATGAAGCAATTCCATTTTTGAAAACATCACCTTTAATAACACAAAATATGGAACTATCTGGGAACAAACTCAGAGTTAGCAAGTCTGAATTAGCTGACTCTGAATTGACATCAATAGAACGGCCAAAAACAAAGACGGCGCTTCTTCAGGCTCGTCGAAGAAAGCTTCTGGAGCAGGACCAGAAATTATTTATGCACAGTAGTTCAGAGGAGGATGAAAGGGTATCATCAGCAGAGCGACCCAAAAGACACTCCAGAACATTACTGCTATCTTCACCAAAGAAACTCAAGACTTTATCAGGTAATCATCTGATCAACAATGATGAAGGAGTCTCAGAAAACAAGAGCAGCATTGATTACAGAAAAAGTCATCATATCCCTTCTGGAAACATTCTTGAATGTCCTTTGTTCTCTCAACAAGCACAACAAGAAACAGATAAACAGGAAAATAAAATAAATAATGAAAATGGAAATATACAAAACAAATTGATTCAAGATGACAATCATAAGCAACCAATGTTAAAATTACACAGAATCTGCGTTGGTGATAAGCAAGAGGATTGCTGTTATCTTTTGGATGCCACAAAAGAAGGAAATATAGGTCGTTTTCTTAATCATAGCTGTGATCCAAATCTAATGGTACAAAATGTTTTTGTCGATACTCATGATAAGAATTTTCCCTGGGTGGCTTTTTTTACCAATAGGTATATTAAAGCAGGATCAGAGTTGACATGGGACTACAATTACTCGGTGGGAACCATACCCGAAGAAGAAATTCCATGTCTTTGTGGATCCATCAAATGCAGGAACATTATAGTGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MBD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856	SET	SET domain	Family	Interproscan
PF01429	MBD	Methyl-CpG binding domain	Domain	Interproscan
PF05033	Pre-SET	Pre-SET motif	Family	Interproscan
PF13771	zf-HC5HC2H	PHD-like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR001739	Domain	Methyl-CpG DNA binding	Interproscan
IPR003616	Domain	Post-SET domain	Interproscan
IPR007728	Domain	Pre-SET domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016177	Homologous_superfamily	DNA-binding domain superfamily	Interproscan
IPR034732	Domain	Extended PHD (ePHD) domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR051516	Family	Histone-lysine N-methyltransferase SETDB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46024	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0042054	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051567	Biological Process	obsolete histone H3-K9 methylation	Interproscan
GO:0070828	Biological Process	heterochromatin organization	Interproscan
GO:0090309	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-