Gene detail

Detailed information of XP_032887971.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032887971.1	GENE 33 POLYPEPTIDE	NC_045968.1	51794176	51924770	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032887971.1

ATGCGTCGCTTTGACAAGCTGAGGAGATCCATTCCGTTTCTGGCACGTTTTCATGTTTATAAAAAGCTCAGTGGGAGCATGCAGTCAGATGAGGGCACAGAGTGGCTTCTTGAACTTCTCACCGAGGTGCAGCTGCAACAGTATTTCCTTCGCATCCGTGATGATCTCAATGTCACCCGGCTCTCCCACTTTGACTATGTGAAAAATGAAGACCTTGAAAAAATTGGAATGGGGCGACCAGGCCAGAGGCGACTATGGGAAGCTGTGAAACGAAGGAGGGCCATTTGCAAGCGCAAATCGTGGATGAGCAAGGTGTTCAGTGGAAAGCGACCCGAATCCGAGTTCCAGCCTCAGCCGGGAACGACGTTTCGCAAACTACCAACTCCGCCACCACCACCGCCAGAAGGGGACCAGTCACTGACCTGTTTGATCAGCGAGATAGATCTGACGTTTTATGAGAAATTAGGCGATGGATCCTTTGGAGTTGTCAGGCGGGGTGATTGGCAGTCGCCTTCTGGCAAAGTAATGAATGTGGCTGTGAAGTGCTTGAAAACAGATGTGTTAAATCAACCCGATGCTTTGGATGATTTTATACGAGAAGTGAATGCCATGCATTTTCTGGACCATCTCAACCTTATCCGCCTATATGGTGTTGTTCTGACCCATCCAATGAAAATGGTTACAGAACTGGCTCCACTTGGTTCTTTACTGGATCGATTGAGAAAAAACCAAGGCTACTTTCTCATTTCAACACTGTGCCAATACGCAATACAGATAGCAAATGGCATGGCTTACCTCGAGTCTAAGCGCTTTATTCATCGAGACCTGGCAGCTAGAAATATTTTACTGGCCTCGAATGAGTTGGTGAAAATTGGAGATTTTGGACTCATGAGAGCTCTTCCACAGAATGATGATCACTACGTCATGCAGGAACATCGCAAGGTTCCCTTTGCTTGGTGTGCACCTGAAAGTCTAAAAACACGAACATTCTCACATGCCAGTGATACCTGGATGTTTGGTGTCACTCTGTGGGAAATGTACACATATGGTCAGGAGCCTTGGGTAGGCCTCAATGGGAGCCAGATTTTGCATAAGATCGATAAGGAAGGAGAGAGGCTGCAAAGGCCTGAAGATTGTCCGCAGGACATTTACAATGTAATGCTGCAATGCTGGGCGCACAAACCCGATGACAGACCAACATTTGTGGCACTCCGCGATTTTCTGATTGAGGCCCAGCCCACAGACATGCGAGCCCTGCAGGACTTCAGTGAACTAGACAAACTGCAAATTCAGATGAACGATGTGATCACAGTCATCGAGGGCAGGGCTGAAAACTATTGGTGGAGAGGACAGAATAAGCGCACACTGAAGGTGGGGCAGTTCCCACGAAATACAGTGACATCCGTGGCAGGCCTTTCAGCCCATGACATCAGCCATCCGCTCAAGAACAGCTTTATTCACACGGGGCATGGAGATACCAAACTTGATCGTTGCTGGGGATTTCCTGACAAAATAGATGAATTGTACCTGGGCAATCCCATGGATCCACCAGATGTACTTGGACTGGATATGAAACTGACCAGGCCAACACAGCTGCCAGGAAGATCAAAGAAGGAGCCTCCTCCACGTCCTCCTCAGCCAACAATCTACGGCAAGAGTAAGTTGCGGCATTTTCTGCAGTTTAAGGGATGTTCCTGCCCTCTCTGTTCCATGTTAGCCCCTCTCTTTAAAGAGCCTGTCTATGACCCTGTGATTGAGGAGGAATCTGCAGGCTCTCTACCACTAAAGAAACTCAGCCTGAAGAAACACGGCCCAGCAAAGTCTTTAAAACTCAACAAACCTGCTGCTCGTGTTTCCGCCACAAAGTTGGGTGACAAGCCATCGGACTGGAGCAGATATTCGGGTCATAATGAGGTGGCTCTGATTGACTTTGGAGATGATCAAACAAGTCACACTCCATCTCCTGTATTGGAGAACACGATTCCTACACTGGCCAAATTAGTGTTGGAGTCGTACTCTCTGCTGGACAGGACACCGCCGCAGAGTCCAACCAGAACTTTGCCGAGACCTCTATATCCAGTTCCAATCGTTGACTGGGATTCCAAACCCTTGCCTCCACCCCCAGCCTATGATGATGTTGCTCAAGATGAAGATGATTTTGAAGTCTCATCAATTAATAGTCTAGATAGCGGATTAATTGAAGAGCGATCAAAGTACGGAACTCCTCAGTTGGCAAGAAATCAAGAATCAGGAGAAACTAATTATGCGTTTGTACATGACTCGGATGGCAAAGGAAAGCCCAAAGTGGAGGATAATTTGTTCCTTCCACCAAGGCAGATGAAGCAGACCACCTTTTCTCAGTCCGCTGAAATATTTGAGGAACTGCAACAAGAATGCATGAAAAGACTTAACGTCCCTATTATTTCAACTCCAGCCTCCTCACCGAGTCCCATCTCCCTGTCAGCAAGTGCATCTCCAACTACTTCCGATGATAAACCTCAGATCCCACCACGGATTCCCATTCCTCCACGGCCTTTGAGGAGAAATGAGCTAGGCCGTTGGTCTGGTGAGTTATCACCTGCATCTGGAGGTGAAGAGGATAAGCCTCCACAGATTCCTCCCAGGGATCCATTGTCCCAGCCATCCTCAAGAACTCCAAGTCCAATGGCAATTCCAGTTAGTTCCCCACAACAAAGGACAAGTGCAGCTTCAATGGCAACATTGACTGTCGGTGCATACCTCTCAACATCTCCCAGCAAGTTAATGCCCACCACTCAGAGTTTTGCCTCCGATCCAAAATATGCTTCACCCAAAGTTATTCAGGCACAAGGAAAGGATGTTTCCAAGGGACCCTGCATCTTGCCAATAGTAAAGGATGGCAAGAAGGTGAGCAGCACACATTACTATTTGCTTCCAGAGAGACCTCCTTACTTGGACAAATATGAGAAATTTTTCAAGGAGGCCGAGTGTGTGGATGAACTGTGTTCCAAAAGATCTGTGACCACGGCAACGGTGAGGCCAATGGTCCAACACCCTGAATACAAAACTAACTTTTCATCCAACAATAGCAATGCAAACCCTGGGATTACAGCAATTAAAACTTCTCAGAGTCTGCAAAGAATCTCTTTTGAGAGTTCCACTGGGAAAATGGACTGTTTTACTCCAACAGAAAAAATTAAAATAGTTCAGGAGAATGTTCATGGCGTTACGATGGAAGAATGTCAGACTGCGCTTCAGAACCACGCCTGGAACCTTCAAAAAGCCATACAGTACCTCAAGGTTGAGCAGCTATTCTGCCTCGGGTTGAAGACAAGAAGTGAATGTCAGAAGATTCTAGAAAAGTTTGACTGGAATCTGGAATTAGCCAGTTGCCACCTGCTAGACACTTACAGTGCAGCTCGACATAGGCGATGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3
Ubiquitin Family	UBD\|Alpha-Helix\|UBA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF09027	GTPase_binding	GTPase binding	Domain	Interproscan
PF11555	Inhibitor_Mig-6	EGFR receptor inhibitor Mig-6	Family	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015116	Domain	Cdc42 binding domain-like	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR021619	Domain	Mig-6 domain	Interproscan
IPR030220	Domain	Activated CDC42 kinase 1, UBA domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR037085	Homologous_superfamily	Cdc42 binding domain-like superfamily	Interproscan
IPR049587	Domain	TNK(ACK)-like non-receptor tyrosine-protein kinases, SAM domain	Interproscan
IPR052112	Family	EGFR Signaling Regulator Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14254	GENE 33 POLYPEPTIDE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004712	Molecular Function	protein serine/threonine/tyrosine kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016310	Biological Process	phosphorylation	Interproscan
GO:0042059	Biological Process	negative regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0045616	Biological Process	regulation of keratinocyte differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-