Gene detail

Detailed information of XP_032885957.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032885957.1	CONTACTIN 5	NC_045966.1	9535905	9729571	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032885957.1

ATGGTTGGAGATTGCTGCAAGCCCATGTATAATGGACAGCGCATCGGAACACTCTACGCCTGTGCCATAGGAATGCAGTTGAACAGTGAAGGATGTAAACTGGCAGAATACAACAGGCTGAAGAGCATGTTATTGGATCTACAGAGCCAGAGGTACTTCCAGAAGGAAAATCTAACCATGGATGCGGTAACGCACAAGAGACATTTGGTGGAAAGCATGTTCAAGGACTTTGACATCAGTAGAAACGGCTTTGTAGACAACAGCGAACTGACACAGGCACTGATGCAAGGTTTCCTTGACAACGACCCCTTTGACTGCAACTTGTTTGATCTTCTTCAGTACGACGACTACAATAAAGACAGCAGGTTGACACTAGAGGAACTCTACACAGCATTCCAGGTTATTCAGCTAAACCTTCCAGAAGATAGGAAGGTCAGTGTTACCACGGTGACCGTCGGACTGAGTGCCGTTATGTCATGTGCTGTTCAGGGCACCTTGAGACCACCTATCATCTGGAAACACAATGGAATCACGTTGAATTTCTTGGACTTGGAAGATATCAATGATTTTGGTGATGACGGTTCCCTCTACATTACAAAAGTGACAACAATCCACATGGGCAACTACACGTGCCATGCCTTTGGCTATGAAGACCTCTTCCAGACCCACATCCTGCAGGTGAATGTCCCACCGGTGATCAGAGTGTACCCAGAGAGCCAGGCACAAGAGCCGGGTGTGGCCACGAGCTTGAGGTGCCACGCAGATGGGATTCCCAACCCAAAGATTACCTGGCTGAAAAATGGTTTGGATCTCACGTCAACATTGCCTAACCAACTTGCGCTCCGAGCAAATGGCGGTGAAATTCACATTAAAAGTGTACGCTATGAGGACACCGGAGCCTACACTTGCATTGCGAAGAACGACGCGGGTGTTGACGAAGATATCTCATCCCTGTTTGTTGAGGACGCTGCTCGAAAGACTCTTGCAAACATACTGTGGCGAGAGGAAGGGTTAAGCGTTGGAAATATGTTCTACGTTTTCTCTGATGATGGAATCACAGTAATCCAGCCTGTGGGATGTGAGATTCAGAGGCAGATCAAAGCTAGCGACAGGATCTTTGTAAGCTTTGAAGAGATATGTCCCTCTGAGGAAGAACAAACTGTTCCACGTTGCATCTGGGCCTCTGCTGTTAACATCAGAGATAAGTACATCTATGTTTCCCAACCCACACTGACTCGGATACTGATCATTGACGTTCCATCACAGAAAGTCCTACAGGCTGTGTTGACAGATCCGGTTCCGGTGAAGTTACAGTATGACAAGTCACATGACCAAGTCTGGGTCCTCAGCTGGGGAGATGTGAACAAAAGCAAACCTACTCTGCAGGTAATTACCCAAGCAAGTGGAAATGGAGACCATCATACCATCCACACGCAACCCGTTGGCAAAGAGTTTGATCGAGTTGACGACTTTTTCATTTCTCCAACCAATCTCATCATCAATCACATTAGGTTTGGCTTTATTCTTCATGGCTCGAACGCAGCACTGCACAAGATTGATCTGGAGACCGTGGCTCACATTAAAACCATCAGCCTAAAGAACTACAGCTGCATCCCAGATGCAATGGCCTACACTCACCTGGGTGGCTATTATTTTATCCACTGTCAGAGAAATGGCTCAAGTCCGCCCCAGTCACAACTCATCATTGACAGCGTCACTGATTCCGTAATAGGATACAACGGTAAAGTGTCAGGTACTCCGTACATCTCGCCAGACGGCAGCTACCTAGTCAGCACAGATGATTACCATGGGCTAATTACAGTCCAGTCTCTCACCTTCCGGGGCGAGATCACGCCTGCGTTTGAAATCGCCACAAACCTGCGCGTGGTTGATGTGACCTTTCAGCCGTCGTTCACGGAAGCCAACGAGTATTACATCTACGCCAGTTCCAGCGTTCAAACAGACCTCCTGTTCATCGAGCTCTCCACGGGCAACGTGAAATTCATCAAGGGCTTGAAAGTTCCCATCGAGCCCAAGGACTGGTGGTGGAACGGCAACAACCGGGCGATAGTCAGCAGTGGTCTATTTGGACAGTACCTGATCACTCCCTCCAATGAGTCCCTGTTCATCGTAGGAGCACGGCAAAACACATTGAACTGCGAGATATCCAAGATAACACGAGGCAACACAATTGTGTGGGTAGAGGAAGCATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-