Gene detail

Detailed information of XP_032884233.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032884233.1	2-5A-DEPENDENT RIBONUCLEASE	NC_045965.1	22831610	22865527	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032884233.1

ATGACTGCAGAATTGGATCCAGAGGCACTTGGAAAGAAGCTTCTAGACCTCTGTCTTTCTTCAAGTCCAGACCTCACAGAAGTGGAACGATTAATTGCTGAGGGAGGATTGGTTGATTTTGTTGATGGTGACATGAAAACCCCTCTTTTTTTAGCTGCAGATCAAGGTAATGAACAGCTAGTTGAATTGCTCTTGAAGAACAAAGCCAATGTTAACTATCAGATTGAGAGTTTCGGTTGGTCACCGCTCCATACCGCTATACAATCAAATCATGAAAAGGTTGTGCATTTATTACTGGAGTATGGGGCAGACCCACATCTCAGGAAGAAAAATGGAGCCACACCTTTCATTATTGCTGCGATAATTGGCCAAGTGAGAGTGCTCCAGCTGTTTCTGTCCCATGGTGCAGATGTCAATGAGGCTGATGCCAATGGCTTTACTGCCTTTATGGAAGCAGCAATATATGCCAAGGAGGATGCCCTACGTTTCCTGTTTGATCACAAAGCGGATGTCAACAAGCACAGGGAAGTGCCTGATGCCAAAAAAATGGTGTGCAGGGGTGGAAAGACTGCACTCATGAGTGCTGTGGAGAAAGGCCACGAAAATATTGTTAACATCTTGTTAGATGAAATGTGCGCAGATGTTAATGCAGTTGACAACCTTGGCAGAACAGCTTTAATTTTTGCTTTGAAGGAACGCAACAAGTCAATTGTGGAAACTCTGTTGAAACATGGGGCTTGTGTAAACAACACAGACAATAACAAAGAAACCCCTCTGAGCACTGCTTTGAAAAATGTTAAACCGGACAGTAATATGGTGGAAATGCTAATAAAATATAAACCAGATATAAACATTCCAGACCAAGATGGGAAAACACCCCTGATTCTTGCAATAGAAAATAAGTTCACAAATGTGGTTGAACTGCTCCTGGAGGATTACAATGCTGACATCAACGTACAAGACAAATCCGGGCAGAGTGCCCTCATGGCAGCAGTGAATAAGGATAATGCCACGTTGACTAAAAGGTTGTGTGAAAGGGGAGCTGATGTTTCCTGCACTAATGCTGCCGGGTATACACCTATAATGGTGGCCAAAAGACTGTATGCTACTGAAATTATAACAATATTGAAGCAGTATGATTCAATGAATATTAAACCAAATGTAGGATCTTCTTCCAAATGGAAAAAGTGCAGTAAACGTTGGCATACAAAACTGGAGAAACTGCAGAAAGTTGTATGTGCTCCTATTGGGAACCTTAAACTGTTTAGGAATGATGATTTTAAGATCACCACAAACAACATACCTGAGGTCTATCTTGGTTTCTATAATTGTGAGACTGAGGTGGCAGTGAAATTCCACAGTAGGTTCAGTGAAAAACCCTCAACGGAAAAGTGTTGCCTCACAGAGCCGAAGATCAAAGCAAGCAATCTGTTTGTTAAACTGGTGGCTTGTGAAACAGACGACTATTGTGAATATCTGTGCCTGGATCTCTATGAGTATAATCTGGAAGAATACGTGCGTCAGCAACCTAAAAAAATTAAACTGAAACGCCGAGATATTATGCAGCAGTTGGTCAAGGCGCTTCAGATATTGCACACAGCCAAGTTCGCACACCGGGATTTGCATCCGTCAAATGTCCTCATAGATGTTGAAAACCGTATACACCTGGCAGATTTTGACCAGAGTGTGTGTTTTGATAACAATCCAACTGTGAAGATATCCGAAGGGACCTGGGAGGCATCCGAAATCCTTCAGAAACTGAAACAACCGCAAACACCAACTTTTGAAGCGAGTGAGCTATTCAAAGCAGATCTACAGGCTTTGGGACGGCTACTGCACTTTCTAGTAACTCAAGGAAAAGACCCTTATAAGAGTGATGATGATTTGTGTGAGAATAAGCCATCCCTTGACGAGGAATTGTACAACCCCAGGAATGCTGAAGTCCGAGATTTCATAGAGGGGTTGCTAGCTCCGGCGGAGACCCGGATTACGCTCCAGGAGGCTGAGCAACATCCGTACCTGTGGAAAGAAGCAGAGAAGAGCAAGTTTGTCCAAGACCTTGCCAATGAAGATGATGTAGCAAAACGGAAAAAGGATAGTGAGCTAGTAGAGATTCTGAATGAGGCCGGCGAGAACGAGGAAAGATCATTTCACAAGTGGACAGCAGAGATAGACACGGAAGTTTTGGATGACATGAACATGGGTCAAAGAAAGAAGCCGAACATGGGTCAAAGTAAGAAGCCAAATGTGAAAAATGTTTACAAAGACACCACCAATGATCTCCTGAAATTCATAAGAAATTTGACCCAACATTTCAATGAAAAAGATGAAAGTATCAAGAAATTAGTTGGAAGCCCAGAGACGTATTGGCTTTGCCGTTTTCCAGATTTCATAATCTCGCTGTACAACGCTGTGAAGGACACTCAATGGAACCACCACTTTCCAAACCAACAACCGCAGCTCCTGCTGCCAACGCCGTCTCCCTCTGGTGGTGCTGCACAAGACTGTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF06479	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13857	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR010513	Domain	KEN domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038357	Homologous_superfamily	KEN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24141	2-5A-DEPENDENT RIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-