Gene detail

Detailed information of XP_032876227.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032876227.1	SWI/SNF COMPLEX-RELATED	NC_045959.1	117194756	117279782	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032876227.1

ATGGCGGCGGCGGGAGGAGCGGCGGCGGCTCCCGGCTCCACACTCTCCCTCACCCGCAAGAAAGACGGCGGCCCCAACGTCAGGTTCCTGGAGTCGTCCGACACGGTGGGCCAGCTGGAAAGCCTGAGGCAGTGGCTGGCCAAGAGCTACAAGAAGTTTGTACATGCAGATTCCCCTTCAAACAAAACACTGGCTAGTCTTGTGGTGCAACTACTCCAGTTTCAGGAGGATGCGTTCGGCAAGCATGTCAACAATCCTGCATTGACCAAATTGCCAGCGAAATGCTTTCTGGATTTCAAAGCAGGAGGAGCCTTGGGTCACATCCTTGGTGCTGCTTACAAATTCAAAAGTGAGCAGGGATGGAGACGATTTGACCTGCAAAATCCCTCCCGAATGGACCGTAATGTCGAGATGTTTATGACGATAGAAAAGACATTGGTGCAGAACAATTGTTTCACGAGACCAACGATCTACCTCTCTCCTGAACTTGACCAGAAATTTGCAAATAAATGGAAGGATGTTATTAAGAGACATCAGGGGACAATATCAGAAGATAAATCGAAAGCCTCCCATTTAATTTATCCTGTTCCGAGCTCCCTGGATGAAGAGGAATGGATGAGACCTGTAATGAAGAGAGAGAAGCAGGTTCTGGTACACTGGGGAATGTTCCCAGATAGCTATGACACTTGGATACCTGTCAGTGAAATTGATGCTGAGATTGAGGAGCCACCAATTCCAGAGAGACCATGGAAGGTGCATGCCAAATGGATCCTGGACACTGATGTTTTCAATGAGTGGATGAATGAAGAGGATTATGAGGTTGACGAAAACAAAAAACCTGTCAGCTACCGACAACACATTCCTATCAGGACAGTAACAGAAGAGGCATCCCGTACACCAGATAGGAAGGATAGAAAATCAGCAGCAGGGTCGAAGAAGAGGAAGCGATCCCGTTCCCCTTCTCCAATCCCAATGCCGACTGAATCCCGGAAGAAGAGCGGAAAGAAAGGGCAGTCGACCCCGTACCTAAAGAGAAGAGGGCAGAGAGAGGAAGAGGAGCAGGAAGACCTAACAAAAGACATGGAGGATCCTACACCTGTACCCAATGTGGAAGAAGTTATTTTACCAAAAAATGTGAACACCAAGAAGGACAGCGAGCACACACCTGTAAAAGGAGGTACAATCGCAGATTTAGATGAGCAAGAAGATGAGCCGTCATCTGCAGGAGGGAAGGAAGAAGAGGACAATGCCAGTACTAAACCAGATCACTTGCATCCTGTGGACCAAGCAGAGGATAATGTCACTGAACAGACGCATCACATTATCATTCCTAGCTACTCAGCATGGTTTGACTACAACAGCATTCATGAGATAGAACGCCGTGCCTTACCTGAATTCTTCAACGGAAAAAATAAGTCCAAGAGTCCAGAAATATATTTGGCATATCGAAACTTCATGATAGATACTTACCGACTAAATCCTCAAGAATACCTGACCAGTACGTCTTGCCGGAGAAATTTAACAGGGGATGTATGTGCTGTGATGAGAGTTCATGCCTTCTTGGAGCAGTGGGGCCTCGTGAATTACCAAGTGGATGCCGACAGTCGACCTCTGCCAATGGGACCTCCTCCAACCCCTCACTTCAATGTTCTTGCGGATACACCCTCCGGCTTGGTGCCAGTTCATCTCAGGACCCCTCAAATTCCAGCCAACCAACAGTTGTTGAACTTCCCAGAAAAGCCAAAGGACAAACCGGCTGACCTGCAGAACTTTGGGCTGCGGACAGACATGTACGCAAGAAAGGGCACCTTGGCTAAACAAAGCAAAGCCAATGCAGCCCGAGACTGGACAGACCAGGAAACCCTTCTCCTATTAGAGGCTCTGGAAATGTACAAGGATGACTGGAACAAAGTATCTGAGCACGTTGGAAGCCGCACGCAAGATGAGTGCATACTGAATTTCTTGCGGCTCCCCATTGAAGACCCATATCTTGAAGACACCGATTCCTCCCTTGGTCCTTTGGCCTTTCAGCCGGTTCCTTTCAGCCAGTCTGGGAATCCTGTCATGAGCACTGTGGCGTTTCTGGCCTCTGTCGTGGATCCCCGAGTTGCTGCGGCGGCTGCCAAAGCTGCTCTAGAGGAATTTTCCCACGTTAAGGAGGAAGTGCCGGTGGAACTGGTGGAGGCGCATGTGAAGAAGGTGCAAGAGTTGGCCCGGTCTTCAGGGAAAGTTGACCCTTCCTATGGCTTGGAAAAAAGTGGCATTGCAGGCACTGCTCCAGAGGAACCAGAGAAAACTGATGTTGAAGAGGAGAAAATGGAAACTCGAGAATCGGAAAGTCAAGAATCTGAAAAGGTGGAACACAAAGAGGAGACTGAAGCAGTTTCGGAGAATACAGAGAAGATTCAAGTTCCATCTCCCAAAGAGTTGGAGAAACCCCCAGAAGTGGAAATGGCAAGCACTGACGTGAAACCAGTTGGATCTGAAGACAAAGATAAAGAAGAAAACAAGGAGAATATTGACATTAGCAGTAAAGATAAAGAAGTGGACGTTGGGAAGAAGAAGCTGCAGCATCACATTGGGGAAGGAAACATTGTCACGGCTGCTGCAGCAGCCCTGGCATCGGCTGCTACAAAGGCAAAGCACCTCGCAGCGGTGGAGGAGAGGAAGATCAAGTCCCTTGTCGCTCTTCTGGTGGAAACACAAATGAAGAAACTGGAGATAAAACTCCGCCATTTCGAGGAATTGGAAACCATAATGGATCGAGAGAGAGAAGCGCTGGAACAGCAACGGCAGCAGCTGCTCACTGAGCGACAGGCCTTCCACATGGAGCAGCTGAAATATGCTGAAATGAGAGCTCGGCAGCAGCTGGAACAGCAGCAACAGCAACAACAGCAACAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCATTCACAAAACACTCCCTCTGCACCGGGCATGCAACAACTCAGCTCTATGGGGGTGATGCAGCAAGCTCCAGTGCTGCCACCGCCTTATCCAATGATGCACCATCAGATGCAGCAGCAGCTCGTAGGCCAGATGCCTGGAGCTGGGCCAATGGTACCAGGGCAACTGATGGCAGGACGAATGATGCCCAACCTCCAGCCGAACTTGTCCTCAGGAGCACCTTCCCATCCAAACCCAAGCGCTGCACCACCGCCAACGCTCAGTAACGTGATGGGCCCACGACCAACGGCAGCCACCAACGGCATGTACCCAGGGCCTGCGGCACAGCCGGATGCAGCAGCGGTCCCCACAACAACAGCAGCGACGCCTGTGGCTCCGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF04433	SWIRM	SWIRM domain	Domain	Interproscan
PF16495	SWIRM-assoc_1	SWIRM-associated region 1	Family	Interproscan
PF16496	SWIRM-assoc_2	SWIRM-associated domain at the N-terminal	Family	Interproscan
PF16498	SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR007526	Domain	SWIRM domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR032448	Domain	SMARCC, SWIRM-associated domain	Interproscan
IPR032450	Domain	SMARCC, N-terminal	Interproscan
IPR032451	Domain	SMARCC, C-terminal	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR049898	Domain	MarR-like, BRCT and chromo domains module	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12802	SWI/SNF COMPLEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016514	Cellular Component	SWI/SNF complex	Interproscan
GO:0031492	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071564	Cellular Component	npBAF complex	Interproscan
GO:0071565	Cellular Component	nBAF complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-