Gene detail

Detailed information of XP_032875749.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032875749.1	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	NC_045956.1	31780456	31909960	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032875749.1

ATGGCCAGTGACAGCTCGAGCATTACCAGTCCTGTGGTACGCCAAATTGACAAACAGTTTCTGATCTGCAGCATCTGCTTGGATCGTTACAAAATTCCTAAAGTTCTTCCTTGTCTTCACACCTTCTGTGAGAGGTGTCTGCAAAACTACATTCCTGCCTATAGTTTAACACTTTCCTGCCCGGTGTGTCGCCAGACGTCCATTTTGCCTGAAAAGGGAGTTTGTGCACTACAGAATAATTTCTTCATTACAAACCTGATGGATGTTCTTCAGCGGACTCCTGACAACAACTGTGAGGACTCCTCCATTCTGGAGACGGTCACAGCGGGAGCAGCAGGGAAACCCCTATCCTGCCCAAATCATGATGGAAAAGTGATGGAGGTTTATTGCCAATCTTGTGAGACAGCAATGTGTCACGAATGCACGGAAGGGGAGCATGCTGAACACCCGACTGTTCTTCTCAAGGATGTGGTCGAGCAGCACAAAGCTTCCTTGAAGACACAACTAGAGGCTGCCAAACAGAGGATGCCTGAATTGGACTCTGCTCTAGGTTCCCTGTCTGAAATCTTGCAAGATTTAACAAATGAGAAAGTAAGCATTGAAGAAGAGATTCACACAACATTCAGCGATCTCCAAAAAACCTTAAATGTACGAAAGAGTGTTCTGCTCATGGAACTGGAGGTCACATATGGTGTTAAACAAAAAGTTCTCCAAGCACAGCTGGATGCATTGATGCAGGGTCAGGAAAGCATCAAGAGTAGCTGCGACTTCACGGAACAAGCCCTAAACCACGGGACGGAAACTGAAGTTTTATTAGTAAAGAAACAAATGGGGGACCGGTTGAATGAACTAGCTTGTCAGGAGTTTCCTTTGCAACCCCAAGAAAATGATCAGCTGGAATTTGTGGTGGAGACTGAAGGGCTTAAAAAATCCATACACAATCTGGGCACCATAATAACCACAAACGCCGTGGCCTACGAGACTGTTGCAACCGGTGATGGGCTGAGACAGTGTGTGATTGGCCACCCTACATCTGTTACTGTCACCACAAAGGACAAGGATGGAGAACTTGTGAAGACTGGAAGTGCTTGTCTTTGTGCTGAGATCGCATCTCCCGATGGGCGCGTGGTCGATGGGGAGATACTCGACAATAAGAATGGAACCTATGACTTTCTGTATACCATTCAGAAAGAACAGAAAGAGGGTGACTTCACCCTTACTCTCAGACTTTATGATCAGCATATTAAGGGTAGTCCATTTAAGTTGCGCGTGATCAAACCCACTGATCTTTCTCCGACGTCTGATGGTGTCAAACGACGTGTGAAATCCCCTGGCAGCGGGCATGTGAAACAGAAGGCTGTGAAACGACCAGCAAGTATGTATAGCACTGGCAAAAGAAAAGAGAATCCAATAGAAGATGACTTAATCTTTAGAATTGGCACCAAGGGAAGAAATAAAGGGGAATTTACCAATTTGCAGGGAGTGGCAACATCCACCAATGGAAAGGTCATGATAGCAGACAGTAACAATCAATGTGTGCAGATTTTCTCAAATGATGGCCAGTTTAAAAATCGTTTTGGTGTTCGTGGACGATCTCCTGGCCAACTCCAGCGTCCGACGGGTGTAGCTGTGCACCCGAGTGGTGATATTATTATTGCTGATTATGACAACAAGTGGGTGAGCATTTTCTCCTCTGATGGGAAATTCAAGGTCAAACTAGGCTCTGGGAAGCTTTTGGGACCGAAAGGGGTGGCGGTGGATCGTAATGGCCATATAATTGTGGTGGACAACAAGGCATGCTGTGTCTTCATCTTTCAGCCTAATGGGAAGCTGGTCACAAAATTTGGTAATCGAGGAAATGGTGACAAGCAGTTTGCAGGTACACTTGATGGTCCGCATTTTGCAGCAGTAAACAACAATAATGAAATCATTGTTACTGATTTTCATAACCATTCTGTTAAGGTGTTCAATACAGATGGTGAGTTTGTGTTAAAATTTGGATCGAATGGTGAAGGAAATGGCCAATTCAATGCTCCTACGGGCGTGGCAGTGGATGCCAATGGAAATATCATTGTTGCTGACTGGGGAAACAGTCGTATACAGGTCTTTGATGGAAATGGATCATTCCTCTCATATATTAACACTTCTGCAGATCCATTGTACGGCCCTCAAGGTTTAGCATTGACTTCTGATGGCCATGTGGTGGTCGCTGATTCTGGAAATCATTGCTTTAAGGTTTACCGCTATTTGCAATAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-