Gene detail

Detailed information of XP_032875276.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032875276.1	MYB PROTEIN-RELATED	NC_045959.1	49779959	49822500	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032875276.1

ATGGCCAAGCGGGCTCGGAGTGAAGATGATGATGATGAACATCTGTTCCAAGATCGTGATTATGACATCCCTCAACAGAAAGGTACAAAGAAGCTCTGTAACAAAGTTAAATGGATACCTGATGAGGATGAGAAGTTAAAAAAGCTGGTAGAAGAACATGGTACAGAAGATTGGAATTTCATTGCTAGTAATTTTCTCAATCGAACAGATGTTCAATGCCAGCATCGGTGGCAAAAAGTCTTGAATCCAGAATTAATAAAAGGACCATGGACTAAGGAGGAAGATCAAAAGGTAATTGAGTTGGTGCAGAAATATGGTCCAAAACGATGGTCACTTATTGCCAAATACCTAAAAGGCAGGATTGGAAAACAGTGTCGGGAAAGGTGGCACAATCATTTAAATCCTGAAGTGAAAAAATCCTCCTGGACAGAGGAAGAAGATAAAATAATATATGAAGCACATAAGCGTCTTGGAAATCGTTGGGCAGAGATTGCCAAGTTGCTTCCTGGAAGAACAGATAATTCAATCAAGAACCATTGGAATTCCACAATGAGAAGAAAGGTTGAGCAAGAAGGATATCTGCAAGAGGCACCCAAATGTGACTTGCTTCCAAGTATGCAGCAACAGAAAGTACCAGCTAGGACTCCTCTGAACCCAGTGCAGTTTCCGAATCAATTTTTCATTCCCGTGTCTTCTCAAGGCCTTAGACATCCATACTCTGCTTCAGAAGAATCTTGCATAGATAATGCAACCACAGGATTAACTCAACAACCACATATTGATGACGATCCTGATAAAGAGAAAAGAATAAAGGAACTTGAACTCCTCCTAATGTCAGCAGAGAATGAAGTCAGAAGGAAACGAGTAGGAGCTTCTCAAGACACTACTGACTTCATCTGGTCAAGAAGTCTTTTTGGTGATGAAAGTTTATCCAGTACCCTGAGTAGCTTGGAAGATAAGGCAAATGAAATTTGTATGAAGGAACCTCTTCAGGGAGCAAGCACACCAGTACACCAGGCCTCTTTCAACCGTTTCCTTGCACAGGAAGAAAGTTCGGTCCTTGGCACACTGCAGTCCATTCCTGATTTAACAAAGACATTTGAACTAATTGAAGCAGATTCTGTAGTGTGGAATGAACTAACTAACTTTGACCTCTCTGAAGTTAATGAAAAAACACCCGCTAAACAGACTCCAGTTAAATTTGAATGTTTGCAGCACAAAGGTGGAATAGGTTATCGCTTTGATGGCCATGCCATTTCGGATCTGAGCAGAAGTACTTGCAGTAATAGCAGTGAGCTTATTCCTATAACATCCCCTGTTGTTGCAAAGTTCAGCACGCCTCCAACCATTTTAAGGAGGAAAAGAAGATTACGCCTTGGTCCATCTCCATCCAGTGACTGCAACAGTCTTTCCTTCATGGATAACAGCACCACAAGCCCAAAAAGTACTCCAGTTAAAGTGCTTCCATTTTCTCCTTCTCAGTTTTTTAATATCTGTTCTGGCAATGACCACCTGAACATTGACAATACAGCACTTACTTCAACTCCAGTCTGTGGACAGAAAGTTCTAGTTACAACTCCATTAAGGAAAGACACGCCTCGAGTTCAAAAAGAAAATGTAGGTTTCAGGACACCCACAATAAGGCGAACCGTTTTAGACAGCACTCCGAGAACACCTACCCCTTTCAAGAATGCACTTGCCGCTCAAGAAAAGAAATATGGGCCTCTTAGAATGGTGCCTCAATCGCTTGCACATTTAGAAGAGGATATTCGAGAGGTCTTGAAGAAGGAGACAGGGACCGACATATTACTTGGAGAAGGAATGGATCCAATCTTCAAAATCTGCGAGCAAGAGCAAAATGCTCCTCTCAAGAAAGTACGAAAATCTCTTGTTTTGGACACTTGGAACAAGGATGCCTTTGGTGCACAAAAGTTCACACAGTCCTCTGTTTCGGATATGCAGTCTGAAAACCTGTTGAATACTTCGTTACTGAGAACACTTTTACCAGAAAAATCGGACCTCGCCACAAGTACATGGAGCAGAAATGTTATCTTGTCTGAAATAAAGCATAAAAATACTTCAAAAACTGTACGATTTGAGATCCCATTGCAGATGACCAGTGAATGGGAAGCAGTTGCTTGTGGAAAGACAGAGGATCAGCTAATAATGACTGAACAGGCTCGAAGGTATCTTACTGCATATAATGGCAGCAACACTAGCAGAACTCTGATCCTGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF07988	LMSTEN	LMSTEN motif	Motif	Interproscan
PF09316	Cmyb_C	C-myb, C-terminal	Family	Interproscan
PF13921	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR012642	Domain	Transcription regulator Wos2-domain	Interproscan
IPR015395	Domain	C-myb, C-terminal	Interproscan
IPR017930	Domain	Myb domain	Interproscan
IPR050560	Family	MYB Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45614	MYB PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-