Gene detail

Detailed information of XP_032872953.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032872953.1	TUMOR SUPPRESSOR P53-BINDING PROTEIN 1	NW_022630861.1	7108	47770	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032872953.1

ATGGACCCTAACGGGACGCAGGTGGAGGCGGACTTCTCTCAGCAGGATACCGCACGCTTGCTGATCGTGGAGGACTCCCAGCCCGACAGCTCCTCGTCCCCAGATGACCCCGAGCTCAGTTACCGCCACCTCCAGGCCCGCTGCCTGTCCAACCTGCAGCCTCCCTCCCACAGCCCAGTCATGGAGCTGCTAACTGGCCCGGCAGCGCCCAAGGGCCCAGCAGGGGGCAGCGACGAACAGTCGGGACAGAGGGAGTCTCGCGCTAAAGTTGCCATGGAAACGGCCGCGGGTCACAGGTCAGATGAGTGGTCCGTTCACGCAGCCGATGACCAGCCGAGACCAAATGGACAAACCAGCGTCCTGGACACCCGCCTCGGCTCGCGCGAGGGAGGAGAGGATGTCACGGACCTCGCGATCAACTCCGTCAGTGCCGTCTCCTCTCAGGCTGGCCTGGAACCGCTGGAACTATCCGAAACCCAGGAGATGGATCCCGTCGCCACCACTGACGAGGCGGTGGCCGGAGACAAGGCTGAGCCGGGGGAGGTGAACGTAGACAATGTGGACCCCCACAGCAAGGAAGCGGAACCTGCTCTGGACACAGGGGAAGCCTCGGAAGCCACGATGACTGACCAGCCTCCTGCCAGGACCTTTGCTGGCTCTTCTCCTGAGAGGTCGGAGGTGACGTCGACCGTGCCTGGCCAGTCGTGGCCGGACAAGCCGGGAGCCGGGCAGGAGGTGGTCGTACATTTCCTGATGCCGCGCGGACTCCGCATCGAGGAGGCCTCTCCCAACACGGACCCCGAGCGGCACCCGGCCCACTCCACCCACGATGCGGCTCACACAGGCGCAGACATTCCCGTGGGAAATAAAGATGTCCTAGCCGCCAGCGTCGACCGGCTGGAGGTCCTTCACTTCTCTGGCCACCAGTCACTGGCTCAGGAGAGTCTCTCAGAGAGCTCCAGCGATATTATCGAGCCGTCCCAGGAGACGTTCGGGCCAACTCCCATCATTGTTCCCAGCAGCCCGACCGAGCAGGAAGGGGTGGAGCCGATGGATACCTCCGCACCGCCTGCCGATACCGCAGAGCCGGGAAGGCCGCCATCTGAGCCGGAGGAGCCGATGGAAATGGAGCAGATGCTGGCTCCCATCGTACCGCAGGCGTCTACCCCGGTGTCGACCGCCGTGCCAGTGTTCACCGCCAGCCAGCTGGCACCAGTGCCAACGCTGCCCGATCTATCTCACGACATTTTTATTCCCACTCCAAGCCTGACGGAGAAGCCCAGCAGTGTCGCGGGGATCGAGTCCCCACCGGCTCGAGCGGAGTGCCGGTCAAAGTCTCCGGTGCGAGAGGAGGGAGACGCGGGGACGATGGACCGTGAGGCTCTGGGGGTGGAGCAGCCGGACGACGGGGCGGGCGAACCGTTCGAGCTGAGGTTGGCCGACAGTCAGTGGACGCAGCCCATGGAGACGGAGGAGGATGACGCTGAAGACGACAGCCAGGCCACGCAGGTGGCGGTGGGATTCTCCGCGGAAATCCAACGGGAAGGTCCGGTGCACGAGAGCCAGGCTCTCCGTCTCTGCTTGAGCGGCGAGCCCGAATCAAAGACCTCCAGCATCCCTGGACCTGATGGCGGAGATACCTCGGAAGGACCCGGGGTGGAATCCAAAGAGAAGGATCTTGCGGAGGAAGGGAGGATGGGCGAAGAGTCCAAGATGACAGAGGAGGTTCCTTGTCAGCCAGCCCTCCCGCCTCGGTCTCAAGACCCTTCTTCTCCGGGATGTGCGGAATTGGCCAGGGATGAGCTGACGCCGAAGGAAGGGGTCGTCAACGAGACGCCAATGGATGAGGTGGTGGGGACGCCCGTGTTCCAGGGGGAGAAGCGGGAGTATCCGAGTCCTCCTGTGCGCGGGATCCGTCCGAACGAGGAAGCCGATGGTGGCGGCCATGGCGACTCTGGGGACCTCCGAGTTCCCCAAAGGCCAACGCAGTCAGGATGTGTCCGTGAAGAGGAGCAACGTAAGGAAGAGGAGCCAATGGAGGAGGATGGCGGTGAACCGTCAGGCCTTGGAATCTCCCGCCCTCCTGCCGCAAATTCCCAAAGTTCCCAACCTGCGGCTTCCAAAGGACGGGAGGGTGGTCTTCACACCGGGGAGGAGGAACTTTCCGGGATTCTCCTGGTCCCCGGCACGGATCCGGGCCAGGGAGAGGAACGGAGCGGAGGGACGCAGCGGGTTTTGGGATCCTCACCGGGTGTCCGCGCGTCGCCTTTGGGACGCCCGGAAGGTGCGGCGGCCTCCGAGGCCACGGACTTCCACACGGAGCTGGTGGTGAAGGTGCAAGCCGAAGGTCCCAGTTCCCTGGGCGGCCAAAGCGGCGCAGGTCCGCGCCAGGAGCCGGGGACGGGCACAGCTCAGAACCACCGCAGGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGCCGGGGCTGCCATCTCCTGTTGACCTGTCGATGGGAACCCCCAAGGAGCGGAGCGAGGGGGAGATCCAGAAGCGGGAAGCGGAGGAGGTCCACTCCAACCCATCGATGAAGAGCCTCTTGGACGGTTCTGGTGACGTCCCGTTCCACTTCACGCTACCCAAGGACGACGACACCATCAGCAGCACCACCCCTCCCCTGGTTGGCAAGTTGAAGCAAGGCCCACGCCATAGCACCCCGATCGAGCCTGAAGGCCGTGGCGCGGAGACGGGTGAAGTGACACCAGGGAGCGCCATGACAACTAGCGGGGTCACAGCAGACGGCAGCCAGCGTCTCCCTCCGAGCCCGGGCTCCCTGGCCGATGGCAAGCTGTGCCTGCGCATGGGGCTGGAGACCCCCGTTCCCGAGGAAGAAGACCACTCGGGCCTCTTCAGCCTGGAAAAGCCTGTGTTGCCAGGGGAGTCCACGTCTGCCTCGGAGGCTGTTGCAGTTGCCAGTGCTGTGAAGAGCCGCTCGGTGTTCAGTCGTGTGTGCGAGGCTCGGCGTGAGACGGAGGCGAGAGAACCGGGGGAACCCACGGCCCTGTTTCGCCTCCCGAGCTCAGAGGGGGAGTCCGAGGAGGTTTGCGAGGAGAGGGTGAATTGGCAGCGGCACCAGCGGGCTAAGCAACACACCCAGCGTCGATTCCCGATGAGCCAGTCTCCGCCAGAGGAGGATGAGGAGGTCAGCGAGACTCCAGAGGAATCCATGCCCGACCCCAGCACCAGCAAGGCTTCGACCAGGAGTCCGGAGGAGAGCGAGGATGAGGAGGTGATGGAGTTGGATCTGTGCAGCCAGGAGCTACCAGCCGGCAGAGCGAAGGGAACGGCGTCTCCGGGGAGGCAGACGGAGACGCCGCTCGTCTCGGCCGTGGGCGTGAACCCGGCGGACAGGGACGGGCGGCGCTGGGCTCCCGTGGTCCAGCCGCTCGTACACACGGGCACCCAGACCGGCGTCGGCAGCGGTATTGGCGGCACGAGCGGTAGCTCGGCCCGGGGAGGCAGCACCGAGCTCCTGTCCCGTGACGCGGTGGTCCAGACCGAAGACGCTCACGGCAAGCCCCAGATGCGCTCCAGGAGCACGTCCTACCACGCGGGCCGGGGGCCGGGGGATCGGGACACGGAGTCGCTGCACAGCCAGCCTCTGATCGTCGCTGTTCCCTCTTCCCCACCGTCCCCGTCCCCGTTGCTTCCCCAGGGGGAGGAGGACACGGAGCTGCCGCCGTTGCCCGGGGGCCGGCACCTTCACCGGCGGGTGCGGACCATCAGGGAGGTGCGGACCGTGGTGACCCGGCTCATCACCGACGTCTTCTATGTGGACGGCAAGGAAGTGGAGCGCAAGGTGTCTGAGGAGCGTGAGGGTCCAGTGCGTGAGGAGCAGGAGTTTGAGGGTGAGGTGTCTCCGTCGCGAGCTGCCGGTTCCCTGTCGTCGGGAGACCTGGCGGACGTGAGCTCGATGTCGTCCAAGGCCTGCAGCTTGCTGCGTGTCTCCAGCAGCCTGTCCTCACTGGCCCACAGCAGCGGCGGCAGTGGCAGCAGCGGCAACGCAGGGGCAACCGTGCAGCAGGAGCGCAGCCGGGTCACTGGCGCGGCGAGGGGCAGGAACGGAGGCCCCGACCCACGAGAGTTCGCCATGCCCGTGGGCAGAGGCTCGCAGAGCAAACTCAGTCCTCGGAGGGTCGGGCCCCACAACTGGTCGCCAATCAAGCACCCGCTCACCGGCGTTGCGGAGAGCGATGAGGCTTCGCTGACCACCAGGCCGTTGCCGAGAAGCCCAGCTCCCCGAGGCAGGGGCAAGAGGGGGCGGCCTCCGATCAGAGCCTCCCTCGGGAGGGAGATGATGCCCCCTCTACCACGTGCCCGTGCAGATGACTGTTCCACCACCCCCTCCCCAGACGAGGACCGCTTCACCCGCATTGCTGCCCGCCCCCCCGACCGTGCCCCCCTCGGGGCCCCCCCGCCCCGCCCGGCCTCGCCCGAGCTGGCCCCCCCACCCGCATCGCCGCCCCTCCCGGACCCCCGGACCCCGGCCCCGGCACCAGCGGCGGCGGCCAGCAGCTTCGTGGGTCTGCGCGTGGTGGCCAAGTGGTCGTCCAACGGCTACTTCTACTCGGGGACCATCACCAGGGACTCGGGCGACGGCAAGTACAAGGTCCTGTTCGACGACGGGTACGAGTGCGAGGTCATGGGCAAGGACATCCTGCTGTGTGACCCCATCCCCGTGCAGACCGAGGTCACAGCGCTCTCTGATGACGAGTACTTCAGCGCAGGGATAGTCCGGGCCCATCGGAAGGAGCCAGACGAGTTCTTCTACTGCATCGAGAAGGACGGCGTGCAGAAGTG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09038	53-BP1_Tudor	Tumour suppressor p53-binding protein-1 Tudor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR015125	Domain	Tumour suppressor p53-binding protein-1 Tudor domain	Interproscan
IPR047252	Family	TP53-binding protein 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15321	TUMOR SUPPRESSOR P53-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-