Gene detail

Detailed information of XP_032869345.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032869345.1	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	NC_045993.1	8540696	8633199	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032869345.1

ATGAGAGATAAGGAAGAAGAAAAGGAAGAACAGTTAATGGAAGAAAAGAAAAGGAAAAAAGAGGACAAGAAAAAGAAAGACGCCACTCAGAAGGTTACAGAACAAAAAACCAAAGTGCCCGAAGCGACGAAGCCAAGCTTAAGCCAGCCTCCAACTGCCACCTCAGTTGGCAGTGTTTCCACACCAGCCGGCAACGGTGGTAACAATGCCAAAAGGGCGGTGGCCACCAACGGCCAGCCACAGAACGCCGCCCGCTATCTGCCCCGTGAGGTGCCTCCTCGATTTCGCCAGCAAGAGCACAAAGTGTTACTAAAACGTGGTCAGCCCCCTCCGCCTTCCTGTGGACTTCTTGGAGGTGGGGCGGGGCCTCCTGGGTTGCCAGGATCAAACCCCGGCACTGCACAACCATTGACGCAACCCAACGGTCCACTGCAGCACGGCAGTACACCAGTGGACACAAACTCTGGGGGTGCTGGTTCAAATTATGCAAATTCTGCTTGGGGTTCTGGATCATCCAGCACTGACCTCAACCACGGCTGGGATAAGTTAATCGTAGACGGGTCTGATATGGAGGCTTGGCCTTGCATCACAGGCAGAGACTCTGAGTCAGCTTCGGAACACGTAGATAACGAAGGTGCCTCAAACCTTGGCTCTGAGAAGAGCCTGCCACCTGGAAGTGGCGCTGCCAGGAATTGCAAAGGAGCTGCAAACCAGTTCGCTGCTGGGAGCGGAAAGAATGAATGTAAATTGGGGGCCTGGAACATGGGCCTTGTGCCTAAACCCAGTCACGCATCTTCCATCTCTTCGGAGAGCAAAGACGGACTTAACAATTGGAAAAACTTGAGCAGCCCTGATGGAGCTGGCCTTGGGTTGACCTTGAACCCAAATATCAACCCATCGGCCTGGCCAGTATTGGGCCAGGAGGGCACTTCTGGAAAAGGTACTTTGGAGACGGACATTTCGAGCTCCAGTGCACAACTTAGTGCAGTAGGTCAAAGCCCTAGGGATCAGGATGGTACTTCTACAAGCGCCTGGGCAAAACAGTCTAAAACGGAAAATGCGGGTGTTACATGGAATGCTTCTGTTGGAGAACAGCCTCAAGCTCTTAACACTGATGGACCAAATAATGGCGACACTAACTCTTTGAATGCAAGCTCACAGAGCACCGGGAACCCTTTGCAAAATAAGGGAGTGTCTGAAACAACAGGGAATGGGACCTGGAGCATGCCCTTAGGAATGGGTTTGGGAAACCCCTTGGTATTGAATCAATCTGTGAGCACTGAAGCCTCATCCGAAGGCAGTATTAGAGGAACTATGGAGGGACGGGCAACTGGGGGTTCTTGGAATACAGTTTGGGGATCTTCTGGAACCGATTCCATTTCTGGACAAAATGGTACAGCAGCTGATGGCAATAATGGACGCAGTGGCGATGATGCAGCAAAAAATGGCTCTGGTATGAAACAGTTACTGGTGAATAGATCAAGAACTGAATCATGGGACAATAATGGTGGATCCTGGGACTCTGAGACACAAGACCCCAACAAAGCAAAAAATTGGGGTAAAGGGAACAGAACAGCATCTGGTAGTGCTCAGGGTTTATGGGGTCAACAGCCAGGGACTGATAATCGGTCAGAAGGAGATTGGGTTGGCTCTACTAATGAACAGAATTGTGGCACAGGCGGATGGGACAATCACAGGGTAAATCCCCCCCCAGAAAACCAAGGAGAGAATGCCCAAAATTCCAGCTGGGTAAAGGCCTCTAGTTCCACTGGGAGTGACTCTGGTAGTCGAAACAACAACAAAAAAGGAGGCGCTGACAACCACCCAGGTGGACGGCGCTTAAACAAGGCTGATCATCCTGACCAAGAGGAAGTATTGCAAACTGTAATAAACAGGGCTGATCTAGACCCAAGGGTGCTGTCAAACACTGGGTGGGGCCAAACTCAGATAAAGCAGAACACAACTTGGGAAGTCCAGGAGTTACCCAGGAATGAGAGGCGCACTGACAAAGGAACAGAAGGGTGGGAGAGCACTTCCACTCAGAGCACTAACTCAGGGGGCTGGGGCGAAGGGCCCAGTCAAACCAGTCGCTGCACCTCTGGGTGGGGAGATGCTCCCCAGTCTTCAAACGTGGAGTGGAAGGATTCAAAGGCTCCAAGTGGATGGGTGGACCCAAAGAACAGTCAAAGTTGGGGAGGTGGAACACCAGAAGAGAAAGCACCATCTTGGAATGATGGGCCTAGAACCAAGGAACCGGGTTGGGGTGCAAGGCAGCAACAAACTCAAGGATGGCCTGCCAATAATGGCTGGGGTGATGGAAGTGGACAGCCAGCTGAGCAACCAAAAACAGGTGGCTGGGACAGCTCAAACCCGAGATGGGGTGAAAGTGGCCGTGGTGATGTAGGATCTTGGAGTGGTGGCAGTAGTTCTAATACTAATCAAAGAGGTGGGTGGGAGGACCCCACAAGACACCAGGGATGGGGTGAGCCATCCAAAGCAACCACTTCTAATTGGAACAAGCAGCCAGAGGTATCTGGTTCCTGGGGCACCGCTTCTGCTAATAGCCGACCGTCTGGGCCAGGTTGGGGCTCGGCACCTGTGCCACCGATGCCCTCTTCAGCTGTCCCACCTGCAACTACCCAAACTTTGCCAAAGGAGGAAGAACCTACTGGATGGGAAGAGCCTTCGCCGCAATCCATCTCCCGAAAGATGGAGATTGACGATGGCACCTCAGCCTGGGGTGATCCCACTAGCTACAATTATAAGAATGTGAATCTGTGGGACAAAAACTCTAAAAATGATAGCTCTGGAAGTGGGCCAATACAACGGGAGCAGAATGCATCAAGTGCGGTTACAGGACGAGGATCCACATCAAGTTCTGGTTCAAAATCAGTGCAGGATGGATGGGGAGGTGGCGATCGACCTACTGTGGCAAATACTCGTCCCCCAAGCTGGGAAGAAGATGATGATAATTCAATGGGCCTGTGGAACAGTACTGGAACTCAGGAGAGTAGTTCACCCTACAACTCAGCTAACTGGACCTCAGGCGGGAAGAAAATTCACAAGGGCTCCATGAAAGGTGGGAACAATGACACATGGATAAACCCCCTCTCTTCGCAATTTTCCAAAATGGGATTACTGAGGGAGTCTTCCGAAGACAGCGTTGGTAACAAAATGGACTTAACTGTTGGTGGTCTACCAGACAAAAAGCTGGAATCTGATAAACGTGGCATGAACATGGATTACAATGGAATGATGAGAAAGGAACGTTCTGGATTCCGGCCATCAAATTCCAAAGATTCGCCCACCACAGACAGTGGACCCTACTTTGAGAAGAATGGCAATCATGGTTTATTTGGCAGCAGCACAGCACAATCCAGAGGTGTGCACACGCCTCAGGTGCAGTCCATGAATTCATCCCAGCCTAACCTTCGGCCTCAAGTGCCTCCGCAGTTCCTGCCCCCCCCTCAGGTTCCTGCCCCCATGTTGAAGCATACCACTCCGAATGGTGCCCTGAACCCAGCCTTGTTTAGCCTTGGTCCTCAACTAACCCCTCAACAAATAGCTATGCTCAGCCAACTCCCTCAGCTCCCACAGCTACAGTTGGCTTACCAGCTGTTGCTTCAACAGCAACAACAGCAGCAAGTGCTGCAAAACCAACGGAAGCTGTCTGCCGCAGTCCGACAACAACAAGAACAGCAACTTGCCCGCATTGTTAATGCCCTGCAGCAGCAACAACAGCAACAACAGCAGCATCGACACAACAATACCCCTGGGATGAAGCATTCTCCGTCACATCCCGGCATGCCCAAGCAACACCTGGATAATGTTGTGCCTAGTTCTCTTCCCACTGGCCTTCCAGACTTCCAGACCAAAGGACAGATTCAGCCAGGCTACCCAATGGGCATGGGCTCAAACATGAACGTAAACCAGTTAGATGTCAACAGTATTGTTGGAATGAAAGAACCTCAATCGCAGCAATCACGGCTCAAGCAGTGGACAACCATGGATGGTCTCTCTCCTGCCACTCCACCACCAGATCACAACCCCCTGAAAAATGGTGCTATTTCGAGCGGCATGGCACCACCGGTGAAGCCTCGAGATAGTTTGCCCTATTATGAAATGATAGCAGGTGATTCCTTGGCCAGCCATTCTGGCCCTACGAGTGATAACTGGTCCACCCCTAAGCTCTCAAATGGTTCCAGCGGCTCCAGTTGGCCTCCAGAGTTCCGCCCTGGGGAGCCATGGAAGGGTTTCCAAAACATTGACCCCGAATCGGATCCGTATGCGACCCCAGCGAGCATGATAAACAGCTCTGCAGCACCCCCATCCCCAGATTCGGAACACCAACTTCTCAGGGACAGGAACACAGGATCCAGTTCCTCCCTGAACACCTCGCTGCCTTCACCCGGTGCCTGGTCCTATAGTGCCTCAAACAGCTCCTACAGCACCGTACCGAGCACTTCAGCCAAGTTCAGTGACTTCAAGTCGACGTGGTCTCCAGATCCAATTGGACATCCCAGGATGTGGAAAAATCAGATGTCATCTAAAAACACTAACCCGCCAACACGGCCACCACCAGGACTGACTAATCAGAAACCTCCGTCATTTCCGTGGGGAAGCGGAACGCCCCGGTTCAGCAGAGGATGGGGCATGCAAGAGTCACGATATGCCCTTAGTTCCAACTGGAGTGATGGCAATTCGGGTGGATCTGGCCGAGTCAGCTCCTGGCTTGTTCTTCATAATCTCACTCCCCAGATTGATGGCTCCACTCTCCGAACAATCTGCATGCAGCATGGGCCGCTGATAACATTCCACCTGAACCTGACGCACGGCACCGCATTGGTCCGGTACAGCACCAAACAAGAGGCTGCCAAGGCCCAGACTGCGCTGCACATGTGTGTGTTGGGGAACACTACCATCCTTGCTGAGTTTGTCAGTGAAGAGGAAGTCAACCGCTATTTTGCACAAGGTCAGTTATCGACACCTTCCCCAGGCTGGCAGACGCTGGAGACAGGACAGAGTCAGATGGATCCAGTGGGGAGCAGCCTGCATTCGTTTGGAGGCCGGGCCAGCCTGGGACAGTGGAACAGTGCCGGAGGAGTGGGCAGGGGTAGTGGGAACTTGGCGGGAGCTTCGCTCTGGGCCACCCCGAGCTACACGGCAAGCTTGTGGGGTGCCCCGAATTCTGACGATTCGCACCGAATGGGCAGTCCAGCGCCCCTACTACCTGGTGACCTCCTGGGTGGAGGGGCTGATTCAATTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10427	Ago_hook	Argonaute hook	Family	Interproscan
PF16608	TNRC6-PABC_bdg	TNRC6-PABC binding domain	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR019486	Domain	Argonaute hook domain	Interproscan
IPR032226	Domain	TNRC6, PABC binding domain	Interproscan
IPR034925	Domain	TNRC6B, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052068	Family	GW182 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0035195	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-