Gene detail

Detailed information of WZF239880 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF239880	DNA POLYMERASE I	HiC_scaffold_1	1992494	1995127	+

Gene Structure

More details in Jbrowse Sequence

CDS

WZF239880.1

ATGGACATTATTTTCGCGGATGATCCACCGGAATATCTGGCCGTGAGCTTTGACATAGGCAAAACCTTCCGCGATGATATCTTTCCCGAGTACAAAGCGACCCGCGCCAAAACGCCAGACGAGTTGCATCTGCAAGTGGACCGCATCCGCGAAGTAGTGGCCGCGTTTAGCATCCCCATTCTAGAGATGGAAGGGTATGAGGCTGACGATGTCTTGGGCGCTATGGCCCAACAAGCGGCCGCGCAGGGTGTGCCGGTCCGTATCCTCACCGGCGACCGCGATTTGTTGCAATTGGTGGACGAGAATACCCACATTCTGTTGGCCGGCCGCCGAGGAACTGAGGAATATGACTCGGCCAAGGTAGAGTCCAAATATGGTATCCGCCCGGATCAGATTGTGGATTACAAAGCCATGGTGGGCGATTCCTCGGATAATATCCCCGGCGTGCGCGGGGTGGGAGACAAGACGGCCGTCAAGCTGCTCCAACAATATCAGACCCTGGATGCTGTCTATGAGCATGTAGATGAGGTCGAGCAGGCTCGTTTTCGCAATGCGTTGGAAAAATATAAGGATAATGCTTATCTGAGCCAAAAGCTGGCGCTCATTGTCACCGACGTGCCCGTCGAACTGGACCTGGATGCTTGCCGCACGGCCGATTTTGACCGTGACAAAGTGGCAGATTTGATGCGTCAGTTGGAATTCCGCTCCTTGGGGGCGCGTTTCCGCAGCACCGTTCCGGCCGCCGGGCAGCAGCTCAGCCTCTTTGGCGAGCCGGCCGGGGTGGGCCGGCCGTCCGCGCTGGGGGACACTGTTACCCACATGGTTTCAACCCAGGCCCAGTTGGACTGCTTGGCCCAGCAGCTGGGCCAAGCGGAGGTCATCTGTTTTGATACCGAGACCACCAGCACGGACGAAATGGCGGCCGAACTGGTGGGGATCGCGCTCAGCTTCCAGGCCGGCGAGGGCTATTACATCCCGGTAGGTCACCTCCGGCCGGAGGATGAGGGCAAACAACTGCCGGTAGAGCAGGTAATCGAGGTTCTGCGGCCGTCGCTCTCAAACCCGGACATCCCCAAGGTGGCCCATAATGCCAAATACGACCTCACCATGTTGCAGCGTTACAACCTTACCGTGTCACCCGTCACTTTTGACACCATGCTAGCTGCCTGGCTCTTGGAACCGGCCAGCCGTGGTTTGGGGCTAAAGAACCAGGCCTGGATGCGCTTGGGTGTGGAGATGATCGAGATTTCCCAGCTTATCGGTAAAGGCGCCAAGCAGATCACCATGGCTCAAGTTCCCATTGCTCAAGCGGCCCCGTACGCGGCCGCCGATGCGGACATGCCCTTGCGTATGATGGAAAGACTGGAACAAGAGTTGCGGGAAAGAGAACTCTGGCAACTCTTTACCGAGGTAGAGATGCCGCTCATTCCCATCATTGCGGACATGGAACAAACCGGGGTGGCGCTGGACGCGAACTTTTTACGCGAAATGTCGGTCGATTTGGCTGATCGTTTGGAAGGCCTAGTCGCCCGTATCTACCAACTGTCCGGGCGCCCCTTTAACATCAACTCTACTCAGCAACTTAGCGATGTGCTATTCAAAGAGCTAGCATTGCCCACCGAGGGCTTGCGCAAAACAAAGTCGGGTCACTATAGCACCGCGGCCGATGTGCTATCCGCGCTCAAGGGCGCCCATGAGATGATCGATTTGATCTTGCAGTACCGGGAAATCGCCAAATTAAAGTCAACGTACGTAGATTCGTTGCCGGACATGGTCAATTCGGAGACCGGCCGGATTCACACGTCCTATAACCAGGCGGGGGCCATTACCGGGAGGTTGGCTTCCACCAAACCCAACCTGCAAAACATCCCCATCCGCACCGAATTGGGCCGACAGGTACGGCGCGCCTTTGTGGCCCGGCCGGGCTGGGTCTTTCTTGCGGTGGATTACTCTCAGGTCGAATTGCGGGTGCTGGCCCACATCTCCCAGGACCCGGCCTTGCTGGAAGCGTTCCGCTTGGGGCAGGACATTCATGCCACCACGGCCGCGGCCGTCAACAACATTCCGCTAGATCAGGTGACCGGCGACCAGCGGCGTTTTGCCAAGACGGTTAACTTTGGGCTCCTGTACGGCATGAGCGCTTTTCGGCTGGCCCGTGATACCGATCTAACCCTGGCCGAAGCGCAGGACTTTTATGATGCCTATTTTCGCCAATTTCCCAAGGTAAACGATTATCTGAGCGACACCATTCGCCAGGCCCAAGAGCAGGGCTGGGTGGAAACTATTTTAGGGAGAAGGCGCGACTTTTTGGTCTTGCAGGGTTCTGATCAAAGCCGCACCTCTGCGCTGGCGCGGCAGCGAGCCGAACGCGAAGCGGTCAATTTCCCCATCCAGGGTACCGCGGCCGATATCATCAAGATTGCCACCATCGATTTGCACCAGGCGTTGACGGAAAGCGGTTTTCAGGCCAAAATGATTTTGCAGGTCCACGACGAGTTGGTGTTAGAGGCGCCGGCCGGGGAGCTGGCGGCCGTAAAAGAGCTGGTGGTAAAAGTAATGGAAGATGCCTTTGAACTCAAAGCTGCGCTCAAGGCCGATACCAAGACCGGCGCCAATTGGCTAGAGATGTCATAG

Transcript

WZF239880.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00476	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF01367	5_3_exonuc	5'-3' exonuclease, C-terminal SAM fold	Domain	Interproscan
PF01612	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF02739	5_3_exonuc_N	5'-3' exonuclease, N-terminal resolvase-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001098	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR002298	Family	DNA polymerase A	Interproscan
IPR002421	Domain	5'-3' exonuclease	Interproscan
IPR002562	Domain	3'-5' exonuclease domain	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR018320	Family	DNA polymerase 1	Interproscan
IPR019760	Conserved_site	DNA-directed DNA polymerase, family A, conserved site	Interproscan
IPR020045	Domain	DNA polymerase I-like, H3TH domain	Interproscan
IPR020046	Domain	5'-3' exonuclease, alpha-helical arch, N-terminal	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133	DNA POLYMERASE I	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0008409	Molecular Function	5'-3' exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-