Gene detail

Detailed information of WZF239820 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF239820	VALYL-TRNA SYNTHETASES	HiC_scaffold_1	1753653	1756410	+

Gene Structure

More details in Jbrowse Sequence

CDS

WZF239820.1

ATGTTGCCACCACCAAATGTGACGGGTAGTTTACATATGGGACACGCATTTCAACATACCATTATGGATGTGTTAACACGTTATCATCGCGGTAAGGGTGAGCAGACACTTTGGCAGCCAGGCACCGACCATGCAGGTATTGCTACACAAATGGTGGTTGAACACCAACTCGCTACGCGAGATATTACACGTCACGATATAGGGCGTGATAGACTCACTCAAAAGATTTGGGATTGGAAGCAACAATCTGGTGGTGTAATTACTTCTCAAATGCGTCGCTTAGGCGTTTCAGTTGATTGGAAAAGAGAGCGTTTTACTATGGACGAAGGACTTTCGGATGCGGTATATAAAGTCTTTATTCAACTATATAACGAAAACTTGATTTATCGTGGAAAGCGTTTGGTTAATTGGGACCCTGTTTTACACACTGCCGTTTCTGACCTTGAAGTAATCAGCACCGAAGAACAAGGCTCACTTTGGTACATGCGTTATCCAGTGAGCGACTCTGATGAAGTTGTAATAGTTGCCACGACACGCCCTGAAACCATGCTAGGTGATAGTGCGGTTGCTGTGCATCCGAATGACAAGCGTTATACACATCTTATTGGTAAGACTATTGATTTACCACTGATTGATAGAAAAATTCCAATCATTTCTGATCATTATGTCGATATAGAATATGGCACAGGTTGTGTTAAGATCACTCCCGCACACGATTTTAACGACTATGAAATAGGTCAACGCCACAATCTAGATATTATCAATATCCTTACCAATGATGCTAAGATCAATGACACGGTTGAGAGTAGCTATATTGGTATGGATAGGTTTGAAGCACGTCAACAAATAATTAGAGATTTAGAGGGGCAAGATTTACTTGAAAAAATTGAACCACACAAACTGATAGTGCCACGAGGTGACAGAACCAATACGGTAATTGAACCCTATTTAACAGACCAATGGTTTGTCAAAGTTACACCACTTGCACAGCCTGCAATTGATGCAGTAGAAAATGGTGATATTCGTTTTGTGCCTGAAAATTGGAATAAAACTTATTACAACTGGATGAAAAATATACAAGACTGGTGCATCTCTCGTCAGATTTGGTGGGGGCATCGTATCCCTGCATGGTATGATGAAAATGGTAAGATTTATGTTGCCAATTCTCTCCAAGAAGCACAAAAACAAGCAGGCAAAGGTGTCGTGCTAACGCAAGACAACGATGTACTTGACACTTGGTTCTCTTCGGCATTGTGGCCATTTTCAACATTAGGCTGGCCTGAAAACACTCCTGAATTTTCACGTTTTTATCCAACTGATGTTTTAGTTACAGGCTTTGATATCATTTTCTTTTGGGTGGCACGAATGATTATGTTTGGACTAAAATTTACAGGCGATGTACCATTTAAAGATATTTATATCACTGGCTTAATCAGAGATAGACAAGGGAAAAAAATGTCAAAATCCAAAGGCAATGTTCTAGATCCGATTGATTTAATTGATGGTATTAGCCTCAAAGATTTATTAAAAAAAAGAACGCAAGGTATGATGCAGCCAAAAATGGCAGAGAAAATTAAAAAGCAAACTAAGAAAGAGTTTCCAGATGGCATTCCTACTTTTGGTACAGATGCACTTCGCCTTACCTTTACAGCACTAGCTTCTTTTGGTCGTGATATTAAATTTGATCTCAAACGTGCTAAGGGTTATCGCAACTTCTGTAATAAATTATGGAATGCTTCTCGTTTTGTATTGATGAAACTTGAAGGGAAAACCATTGACACTAATGCAATATTATCAACGGCTGATAAGTGGATTTTATCACGTTTGCAAGATACAAAAACCAAAGTTATAAAGCATTTGAGCGACTATCGTCTAGACTTAATGAGTCACGAATTATACGAATTTGTTTGGAGTGATTATTGCAGTTGGTATTTAGAGTTCTCCAAACCTTTATTGTTAGACAAAACTACTAAAGCTGGCACTAAGGCAACACTCATTAAAGTCTTAAATGAAATAGTGGGCTTGCTTCACCCTATCATTCCGTTTATCACTGAAGAAATCTTTGAACAATGTAGCGCTATTCTTGGTAAAGATAAAAGTAGCTTGATGAGTGAGTCTTATCCGGAAGTTGACACACAACTTATTTCAAAGAAAGCCGAGGTAGAAATTAAGTGGTTACAAACTTTCATTCTATGCGTTCGTCAGATGCGTGCACAAATGGATATTGCACCAAACAAGGTATTGAATTGCTTTGTACAAGGCTTTAATACAACAGATGAAACCTATCTTAATAAGAATGCTAGTATTTTAAAAACCTTGTCACAAATGGAAACTATTAATAAACTCTCTAGTAATGATGAAGCGCCTGAATCAGCAACAGCATTAGTGGGAGAAATGAAAATTTTTATTCCTTTGCTAGGATTGATTGATAAAGAGCAGGAAATTATACGTCTACATAAAGAAATTGAAAAATTAAATCAGAAAAAAGTACAATTTTTAGGTAAATTAAACAATAAAAAATTTATCAGTAGTGCGCCTGAGGCAATTATAAACACTGAAAGAAAAAGATTAGCTTCAAATCAGAATGCTATTTCTGATTTATCCACGCAACTGGAGAAGATAAACAAATTATGA

Transcript

WZF239820.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00133	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF08264	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF10458	Val_tRNA-synt_C	Valyl tRNA synthetase tRNA binding arm	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001412	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR002300	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR002303	Family	Valine-tRNA ligase	Interproscan
IPR009008	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR010978	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR013155	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR019499	Domain	Valyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR033705	Domain	Valyl tRNA synthetase, anticodon-binding domain	Interproscan
IPR037118	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11946	VALYL-TRNA SYNTHETASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0002161	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004832	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006438	Biological Process	valyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-