Gene detail

Detailed information of WZF238580 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF238580	NUCLEAR PORE COMPLEX PROTEIN NUP133	HiC_scaffold_612	128	188605	-

Gene Structure

More details in Jbrowse Sequence

CDS

WZF238580.1

ATGTTTTCTCCTGTTAACATGTCAACATCTAGAATGACTTCATTCTCAGAATCATTTAATCGAAGTCGAAAAAGCAGGGGTCATTCCTCTATCATGATTGCAGACCAGACATCAGAATGCATTTTATCTAGCTATGGACAGTCATTACCTGTACTGGTTACTGAGGCAATAACACTCGCTGATCAGAGTGCTGAGATGACTGCACGCTTTGATGCACATGGTTGGGCATGGTTAGTGGTTGGTAGAAAACTTTTTGTCTGGCGCTACAAGACAGCTGCGACTAGTACAAGGGCAACACAGTGTAAAGAGCTTACATTGCCGCCAAGTGACCTGGCACATAATGCCAATAGAGTAGTTATTATAGCTGCACCTAATGACAGTCAGCCTCCAGCATGTGTGTCTGTCTCACCTGAGGGGATTATTCGCTACTGGTCAAATATAACACAGGAGAATTATTCTGTAGAGATCAGTGCTGAGCTAAAGGGTGAGGAATGCGCTACGGTGGTGGCAATGCAGCCTGGTTTGTGTATCCTAGGCACTACGACAAGCTCTCTGCTTCTTGTCAGCATCAGCCTCATTCATAATACTGTGTCATGTCGACCATTAAAAGCCACTCAAGGGATGCTGTCAGGATTCAGTCGACGAATGTCATCATTCTTTTTTGGCTCAACACCAGCACAGATGACAGGAGCGCCTCTGCACCGATTATTACCATGCATAGATAGCTCTGAAGGTCACAACTTCTTTGTGTTATCTGGTACCCTAATGCAGAAATGGCATCTTACTGAGACACAGCTAGAAAGAGTTGTGTTTCAAGCCGAGGTTGGACGACTATTCAGAGAGGCATTGGCTAGTAAAGTTTGGGGCTCTGACTCATCACGGATAGCACAGCTGAAGATATGGCTGATGGACATTCAAATTACGGGAAATGGAGTACTCGTGCTTGGTGCGGGATGGAATCTTGAAGTATCGCAAGCTCTCTATTATGGCTTAGGTTTACTGTCAATTTCTGAAGAGGAGCCACCCAAGGCTTTGGATCATTTCTTCCTCATCAATTATGCTGAAACCTACCAGGAGGACCTGGAACCAGAGCTGCTTAGCTACAGTCTATTGGTACCTGATCCCAGTACACCTCTGGCTCTGCTGCATAACTATAAACAAGTACTTATTGTGCCAGGTGTAACAGATTCTGGTACATCTCAACCTGTTGATAAGGTAGAATTCACTGCTCCTGGAGAGAGACTCATTGGAGCAGGTGTGTGTAATCGAACAGCGGTACTATTTTCTAATAACTGTGGCCTGTTTTCCATCACGCGAGCATCACAGCAGGAGACAAGTATGTTGGAAAGTTTTCAAGATGAGACTATTACTGGTTTATATCCTGAAATGAAATCTGTGAACTTGTCCACTAATCAAGCACACAAATTAAGCTTAAGTAGCGAAAAATCGGACCGCTTCAAAGCAGCATTTCTACTCTTCTGCAAGACTGATATGGAGAAAGCTCAGGAAGTGATTGACACTCTGTTTCCATGTGAGGATGCTGTGGTGGAGGTTGGAAGTGAACTAGATAACCTGGTTGTAAACTTAAGTAGAGATATTATTGATGACTACCCTGTACAGGATCCACGCTGGGCAGATGGAGTTAAGAAAGACTCAGCAATGAGCACACACTCACTGATTATACAGCAGCAGCTTAAGGACAAGCATAAAGCTCATGATTACTTGGTCACATTTCTTCGCAGATTACAATTATGGGAGAGACTAACCATGGTTCATGTACGCGAGAGCTGGGTGTCAACACGTCTACATTTATGTGAGAATGTGGAGAAGATTGTTGCCACGTGTGCACTAAGAGAGATGCATTCACAGTACAGTGGTCTGATTGACAATTCCATTAAGCATGTGTTAGATCGTAGACAGGAGGACAAGAGCAGTGCATCGGGACTGCTGCCACAGGATCTCTTCTTTAGAGAGGTATCTCGGATTGAAGAGATAGTGTCAGCATTGATTGATTATGAAGAGTCCATGATGAACAGTTTGACATCCAAGGATCTAGTCAATCTCATTAGCTCAATCAGTACAGTATTACAGGGTATGTTCCATGAGGCTATTCAGTATCGACGTGAGAAACTATCATTTTATGAACAGCAGGTTAGTGATGATGACAGCCAGAAGAACAATTACCTGCCTTGGACAGCTGGCATGGGGAAAAATGGATGCCGGACATTGCTTTTCAAACAGTTTGATATGCTAATCACTCGTGCCTTACCAGAAGAAGGATCAGTTGAATCACAAGGGACACTGTATCAGCAGGCGCTAGGTCTAGCTGACTTTGTTCTGGATGCTTACTGCTGCCATCTAGAGTTTGTGCGTCACAGTGAGGGTGAGAATGACACATATCGTGCTGTACTGCAGAAGTATGAACAGGATAGATCACAACTCATACGTACATTCTTGTCAGGAGAGCAGTATGAACACGCCACTTCCTTGGCTGAGAAGTATTATGACTTCACTATTCTCATTGAGATATGTGAGAAGCTGCAGGCACCAGAACGACTGGAGAAATACTGCACACACTTCTCAGAACAGGGTTTCTCTGAGGAGCTGTTCCGCTGGTACATCAAAGAAGGCAAACGTGGTCGGTTACTGTGTCAGCCATTTATGGCACAGACAAAACTTAGTCAGTTTTTGGAACAGGACAATAATAAATATCTTAGTTGGCTGCAGCATATCGGCAATAACAACTATGAACAGGCGCACCGGGTTCTTCTGGATTTAGGTGTGAATGAGAAAGAAAGTTCTGCCCGGAAGAAGACATTGCTGAGTCTGAGTAAGCTAGCGGCTCTTGCCTCTGAGGAACCACCTGCAGATATGGATGATAAAATGGACATGATCAATGAGGAACACACTGTGTTACAACATCAAGATGATCTGCCATTAGAACTATTGGAGAGACTTGGCATGGAAGCTGACAAAATGCGTGTATTATCACCTGAAGAACTGATAGAATTGTATGTGAATGAAGAGAATGATGTAGCCACAGAGTATGACTTCAAGAAGGCACTAGATCTACTTAACTTTATCAAACCTGGTGATTCCAGTCTTAATGTAGCAGACCTGAGATTACATATCTGGTGTCAGGCATTGTTACGAGACAGATGGAACAGCTTAGGCACCGATAATCCACTACAGAGTCTTCAACAAACTATATTCTTCAGAACTGTGGAACTGGCAGCTAATGAAGGTATGGAATTGTTGAGTTTTGTGCCTCGTTTAGACACCTTACTTGCTGCAGATGAGTTAGGTACAACCAAGTCAAGCACAAACTTTCAGTTTCTGATCCGAGCTTGTTATGAACAAATAACGAGTGTGATTGAAATGAAAGCAGCGTAA

Transcript

WZF238580.1

ATGAGACCTAAATCAGGAGGAATATACAGTACAAGAATAAGTCTTTTTAAAATTGAAAACCGGGAATAAGACACGTAAATTTTGTAGGGTTATACAAATTAATATGTTTTCTCCTGTTAACATGTCAACATCTAGAATGACTTCATTCTCAGAATCATTTAATCGAAGTCGAAAAAGCAGGGGTCATTCCTCTATCATGATTGCAGACCAGACATCAGAATGCATTTTATCTAGCTATGGACAGTCATTACCTGTACTGGTTACTGAGGCAATAACACTCGCTGATCAGAGTGCTGAGATGACTGCACGCTTTGATGCACATGGTTGGGCATGGTTAGTGGTTGGTAGAAAACTTTTTGTCTGGCGCTACAAGACAGCTGCGACTAGTACAAGGGCAACACAGTGTAAAGAGCTTACATTGCCGCCAAGTGACCTGGCACATAATGCCAATAGAGTAGTTATTATAGCTGCACCTAATGACAGTCAGCCTCCAGCATGTGTGTCTGTCTCACCTGAGGGGATTATTCGCTACTGGTCAAATATAACACAGGAGAATTATTCTGTAGAGATCAGTGCTGAGCTAAAGGGTGAGGAATGCGCTACGGTGGTGGCAATGCAGCCTGGTTTGTGTATCCTAGGCACTACGACAAGCTCTCTGCTTCTTGTCAGCATCAGCCTCATTCATAATACTGTGTCATGTCGACCATTAAAAGCCACTCAAGGGATGCTGTCAGGATTCAGTCGACGAATGTCATCATTCTTTTTTGGCTCAACACCAGCACAGATGACAGGAGCGCCTCTGCACCGATTATTACCATGCATAGATAGCTCTGAAGGTCACAACTTCTTTGTGTTATCTGGTACCCTAATGCAGAAATGGCATCTTACTGAGACACAGCTAGAAAGAGTTGTGTTTCAAGCCGAGGTTGGACGACTATTCAGAGAGGCATTGGCTAGTAAAGTTTGGGGCTCTGACTCATCACGGATAGCACAGCTGAAGATATGGCTGATGGACATTCAAATTACGGGAAATGGAGTACTCGTGCTTGGTGCGGGATGGAATCTTGAAGTATCGCAAGCTCTCTATTATGGCTTAGGTTTACTGTCAATTTCTGAAGAGGAGCCACCCAAGGCTTTGGATCATTTCTTCCTCATCAATTATGCTGAAACCTACCAGGAGGACCTGGAACCAGAGCTGCTTAGCTACAGTCTATTGGTACCTGATCCCAGTACACCTCTGGCTCTGCTGCATAACTATAAACAAGTACTTATTGTGCCAGGTGTAACAGATTCTGGTACATCTCAACCTGTTGATAAGGTAGAATTCACTGCTCCTGGAGAGAGACTCATTGGAGCAGGTGTGTGTAATCGAACAGCGGTACTATTTTCTAATAACTGTGGCCTGTTTTCCATCACGCGAGCATCACAGCAGGAGACAAGTATGTTGGAAAGTTTTCAAGATGAGACTATTACTGGTTTATATCCTGAAATGAAATCTGTGAACTTGTCCACTAATCAAGCACACAAATTAAGCTTAAGTAGCGAAAAATCGGACCGCTTCAAAGCAGCATTTCTACTCTTCTGCAAGACTGATATGGAGAAAGCTCAGGAAGTGATTGACACTCTGTTTCCATGTGAGGATGCTGTGGTGGAGGTTGGAAGTGAACTAGATAACCTGGTTGTAAACTTAAGTAGAGATATTATTGATGACTACCCTGTACAGGATCCACGCTGGGCAGATGGAGTTAAGAAAGACTCAGCAATGAGCACACACTCACTGATTATACAGCAGCAGCTTAAGGACAAGCATAAAGCTCATGATTACTTGGTCACATTTCTTCGCAGATTACAATTATGGGAGAGACTAACCATGGTTCATGTACGCGAGAGCTGGGTGTCAACACGTCTACATTTATGTGAGAATGTGGAGAAGATTGTTGCCACGTGTGCACTAAGAGAGATGCATTCACAGTACAGTGGTCTGATTGACAATTCCATTAAGCATGTGTTAGATCGTAGACAGGAGGACAAGAGCAGTGCATCGGGACTGCTGCCACAGGATCTCTTCTTTAGAGAGGTATCTCGGATTGAAGAGATAGTGTCAGCATTGATTGATTATGAAGAGTCCATGATGAACAGTTTGACATCCAAGGATCTAGTCAATCTCATTAGCTCAATCAGTACAGTATTACAGGGTATGTTCCATGAGGCTATTCAGTATCGACGTGAGAAACTATCATTTTATGAACAGCAGGTTAGTGATGATGACAGCCAGAAGAACAATTACCTGCCTTGGACAGCTGGCATGGGGAAAAATGGATGCCGGACATTGCTTTTCAAACAGTTTGATATGCTAATCACTCGTGCCTTACCAGAAGAAGGATCAGTTGAATCACAAGGGACACTGTATCAGCAGGCGCTAGGTCTAGCTGACTTTGTTCTGGATGCTTACTGCTGCCATCTAGAGTTTGTGCGTCACAGTGAGGGTGAGAATGACACATATCGTGCTGTACTGCAGAAGTATGAACAGGATAGATCACAACTCATACGTACATTCTTGTCAGGAGAGCAGTATGAACACGCCACTTCCTTGGCTGAGAAGTATTATGACTTCACTATTCTCATTGAGATATGTGAGAAGCTGCAGGCACCAGAACGACTGGAGAAATACTGCACACACTTCTCAGAACAGGGTTTCTCTGAGGAGCTGTTCCGCTGGTACATCAAAGAAGGCAAACGTGGTCGGTTACTGTGTCAGCCATTTATGGCACAGACAAAACTTAGTCAGTTTTTGGAACAGGACAATAATAAATATCTTAGTTGGCTGCAGCATATCGGCAATAACAACTATGAACAGGCGCACCGGGTTCTTCTGGATTTAGGTGTGAATGAGAAAGAAAGTTCTGCCCGGAAGAAGACATTGCTGAGTCTGAGTAAGCTAGCGGCTCTTGCCTCTGAGGAACCACCTGCAGATATGGATGATAAAATGGACATGATCAATGAGGAACACACTGTGTTACAACATCAAGATGATCTGCCATTAGAACTATTGGAGAGACTTGGCATGGAAGCTGACAAAATGCGTGTATTATCACCTGAAGAACTGATAGAATTGTATGTGAATGAAGAGAATGATGTAGCCACAGAGTATGACTTCAAGAAGGCACTAGATCTACTTAACTTTATCAAACCTGGTGATTCCAGTCTTAATGTAGCAGACCTGAGATTACATATCTGGTGTCAGGCATTGTTACGAGACAGATGGAACAGCTTAGGCACCGATAATCCACTACAGAGTCTTCAACAAACTATATTCTTCAGAACTGTGGAACTGGCAGCTAATGAAGGTATGGAATTGTTGAGTTTTGTGCCTCGTTTAGACACCTTACTTGCTGCAGATGAGTTAGGTACAACCAAGTCAAGCACAAACTTTCAGTTTCTGATCCGAGCTTGTTATGAACAAATAACGAGTGTGATTGAAATGAAAGCAGCGTAACACTAGAATTACCAAACTATGAAGTGTATTAGTGGAGTCTGAACATTACCGTTGAAAGTCAGGGTGGTGCTGATCATCCAGACATGTATCATGTCACCTGTGTTAAACATGCACCTTAACGAGCACCACCAGGACATCATTAAAGGTAGACAATCTTTAAAACATACAAGATGCCATGGCCTAGGTGAAATGACTTGTATCCACAATGCTATATCCCAGGTGAAATGAAGTTTGAATCTACAATGCCATATCCCAGGTGAAAAGACTTGTATCCACAAGATTGTTGTTATTTACCTATTTGATGGTCAAGTCATCAATAAGCAGCCTCTGCAGTGGTCTTGAGGAAGGCCCCTTTGTAGACCAAGACAGGACTATTTAAGGAAAATTACCACTAGAATGACTGGCTCGATAAACTAGCCATACTGGCTCGATAAACTAGCCATAACTGGCTCGATAAACGAGCCAGTAATTCCAGTCAAAAATTTTCTAAAATAATCTTTTGGCCTGTAAATGGAGTCGCTAAGAATCAAAATTTTCTTAACAAATCTTGACCATTAAAGTGCTAAAACTGATCTTTCAACCATTTGTATTAAATTGTAAAAAATAGTTAACTGCCTTTGTCTAAAAAAAACCGAGAATAATCTTGAGATCTATTTATGAATGTTTTCCAACTGATACATATGGAGCAATGAACTATTCACACACCATGAGACTCAACTACTCCATGACTGATTTTATCCTGGTGAGTCACCCATATGATTGCAGAGTGCTACAGGACAGCTACATTTGTTTCCACCCGCAGAGGGTGAGGTCAGTAGGTCAAGAAATTTATTGTAACACAAATCCTCCAAAACCTTTGGATGGAATGCAACAAAATTTGATATGTGAGTTACACATGTGATTGAGGAGTTGAAGAGGTCATTTACATTTGGCTCAACTCCAGGGGTGGAGTGCGAGTGGGTCAAAGCGTTAAAAGTGGGGATTTGCTGATGCATCATCGACTGAGAAATCTTGTTAATTACATTATCACATTGCTAGATATATATATACACAAGCCTGAACATAACTACCTGACATTGTCAGGCACAAATCAAGCAAATGTCAGATACAGACACTCCAGTACCTGACATTTTGTGACAGATTTATAGTCACAGACTCAGTTAGTTCCAATGTGCAGCTTGGTTTACCTATTTTCAGTTTCCTAGTAAAGCACATTACTAAGTGGAAAAACAGTGACAGGCAGTACATTATGAATGTCTGGTACAAGGTAGTTGGTGCCTGACAAAGTGTCAGACACCACTGAAATAGTTATTTTCAGGCCTGTATATATGCAGAGGATAACAAATTTAAAACACAGTATTAGCCCATTGTAGGGGATCATATCGGATTCAAAGCGCCTTTTTACCAGTCATGGAGCCACAATCTTTTGATCTCAAATGAGCATATTTTGCTGTATTACTAGGCACTTATGGAATACTAATAAATTAAAGGAAAATCTGTACATTATATTCTGTGTAATAATATCATTGACTAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03177	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan
PF08801	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007187	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR014908	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037624	Family	Nuclear pore complex protein Nup133-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13405	NUCLEAR PORE COMPLEX PROTEIN NUP133	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-