Gene detail

Detailed information of WZF234930 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF234930	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	chr12	42703755	42757270	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF234930.2

GTTCTCAGAAACATTTGAAGATACATGTAAACGATGGCATCATATGTATTCATCTGCAGATCATTGACTTTAATCTCACGTTCTCTTCCAAGATCTTTGGCCACTATTCATGAAAATATTTGTCACGAAAGATTTTGTACATTATCCAGACATATTCATCTCTCTGCCTCCGCATTATTTGCCAGAAGATGGACTATTATGAATCCAGCAGTTACTAGGCAAAGACGAAAGGGTCAGTTCTTAAGTGGGGAAGAAAATGTGGATAAGACAAGTGATGACAGTTTGGACAAACATCAAGTTGAGGCTAGTCATGGCACAACAAACACGAATGTATTTGATGATCAGCATGGGATGCATGTACACAGCAATTCAAGAATAATACATTCACACAGTAGGAAATCAAACATAACGAATTACAAGGCAAATGATGCTGTTAGGAAGACACACCAAGATTTGGAACAACAGCAAGACAGTAATGTTAATGAGTATATATTTGATGATCTTCGTCAAGTACACAGAAATGCACATATGTCTAGAATAACGCAGTCGCGTATGAATGAATCACCCATAGAAAGCCAATCATCAGCCCATCTTGATAGACCTAGAGGTTCACAAACATTTAACAAGACGGTTAGACATCATTATGATGGTATCGGTGCTAATGTTAGTGAGTCACCTGCCTATGGACAGGCACATGGAAACGCATTCTATCGACCAGCTGACAAGAAAAGGATTAATGAGGGTAGAAACAGTGCACACGATCAAAAAGAAAGCAGGCCGACCAGGATGGCACATTCTCAGCATCGTTCTCAACCTGAAGAGCGCATACTGTCTAGGAAGCATCCTTGGCCTCATTCTGAACCAGGAGTGCACAGAAATACCATGATTCATCATCAGTATCATCCTGAAGGTGACGGGTATAGGCAGAGTAGGATTCATCATCAGTATCGTCCTGAAGTTGATGAGTACAGGCAAAGTAGGATTCATCATCAGTATCGGCCTGACGGTGACGAGCACAGGCAGAGTAGGATTCATCCTCGACATCGCTTTGAAACAGAAGAGCACAGAGCAGCCCAGATAAGACTTACTGGTGAAGGACTGTTTGGTGTCCATCCAGTTAAATTGGCACTGCAGATCAGAAAGCGACAAATGTATACATTATATTTACATGAGAAAGAGGGAGTATCAATGATTTCACGAGAGTTTGAAGAAATGGCCGTGTTGAAAGATGTAAAGTATGAATACTGTTCAAAGAGAATGCTAGATGTGATGTCAGAAGGTAGACCGCATCAGGGTGTATGCTTGGATTGTTCACCGTTATCAATGAGTCCGTATTCTATGGATGATGCAGAAAAACAAGCTAGACTGATATCCACAGAAAACAGAGATGTTCCACCACTGTGGCTTTTCTTATACCATGTGAAGGACCCAATGAACTTTGGCGCTATTTTACGTACATCCTACTTTCTGGGTGTAGATCGAATCCTCACAGGCAGACATAACAGCTGTCCTCTGTCACCTGTTGTGAGCAAAGCTAGTTCTGGAGCCATGGAGTTGCTAGATGTATTCAACACACACGGTCATCTGTCTGAGTTACTGCAGGTACACAAGTCTAATGGTTGGTCAGTATTGGGCACTGACACAGGTGTTTCATCAGCTAACCAGTATGACGAGAAATTGATCTCAGTCCACGAATGTCAATTAGAGAGGCCCACTCTCCTCGTCATAGGTAGTGAAGGTACAGGTTTACCACCATGGTTGCTTCGTGAATGTGATCAGCTTCTTACAGTCAGACCATTTATAAACCAGGACACACAGTCTTTATCATCTGCTGTGACATCGCTCAATGTCTCAGTTGCTACAGGCATTATCTTGCACAGTTTAACATATACAAATAAGATGAAGAGGGACAGATGACACACATGAATCAAAGATGTAATTATCTCTCAAGAAAGCCACATTGACAATAGAGCAACGGTCAACAGTAGAATCAACACGTCTGTCTTGTTGGATTTTTAGCATCATTCACAATGTTGCCTTTAGATGAATGATGTTGCACTCTAAGACAACAGCTTTCAACAATAGAATTTTCAAAAGGAACATTTCTTTTTATTGCTCGTTTGGACACAGCAATATAACTTTCATGTCCAGTTGTATCAGTAGCAGATCAGCTGACATCTCATTCATTGTATTCCAAACTAGCAAAGCAACATTCTCAATTTGTTGGATCACAGGTAAAAGTTCTGGTATATGCACCCATTCTTGTATTAAAATTTGAGCTAAACTGGATCAATAGTTTCCCTGTTATACATAGGTCATGAATTCGATCCAGGTTTTTTTATCCGGATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00588	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan
PF08032	SpoU_sub_bind	RNA 2'-O ribose methyltransferase substrate binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001537	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR013123	Domain	RNA 2-O ribose methyltransferase, substrate binding	Interproscan
IPR029026	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR029064	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR047182	Family	rRNA methyltransferase 1, mitochondrial	Interproscan
IPR047261	Domain	rRNA methyltransferase 1, methyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46103	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000154	Biological Process	rRNA modification	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0016435	Molecular Function	rRNA (guanine) methyltransferase activity	Interproscan
GO:0031167	Biological Process	rRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-