Gene detail

Detailed information of WZF232960 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF232960	PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER	HiC_scaffold_1	4541579	4546003	+

Gene Structure

More details in Jbrowse Sequence

CDS

WZF232960.1

ATGCTATTTAGTGTAAGCTTGATGGTTAATAGTGCTTATGCTAGTAAGAATAGTGTTACTATTGGAATGATACTTGAACCACCACATCTTGACCCAACTGCGGGGGCATCAGCAGCAATTGATGAGATTGTTTATAACAATATTTTTGAAGGTTTAACTCGTATTGATAAAAATGGTGAAGTTCAGCCATTATTGGCAACACATTGGGATATATCTAGTGATGAATTAACATATAAGTTTTATCTGAAGAAAAATGTAAAATTTCACAATGGAAAAATATTTGGTTCTGATGATGTGGTTTTTTCTATAATGCGTGCAAAAGATGAAAAAACGACAAATCCACGAAAAGAACAATTTACTAATATTGAGTCAGTAAAAGCATTTGATTCAACTACTGTCGTTATGAAATTAAAAAATCGACGTGCTTTATTTCTTTACGAAATGGGATCAGGAAACGCTATAATTGTTGAAGAAAGTAGTGCCAATACAAATAAAAATCATCCAATTGGTACAGGTCCTTTTATTTTTGATAAAATGAAAAAAGGTTATTGGGTTAAATTAAAGAGTAATAAAAATTACAGTGGTAAAATATCTAAGATTAAAAAAGTAAAATTTCGCTTTTTACCAGATAATTCATCTGCAACATCAGCATTATTAAGTGGTGATGTGGACGCATTCCCACTTTATAACGATATGATATCGCTGCCAATTTTTAAAAATAATCCAAGATTTAATGTTATAATTGGTTCAACGGAGGGTGAGACATTAGTTGCAATAAATAACTCAAACTCTAAATTTAAAGATATTCGTGTTCGCCGTGCATTGAACCATGCTATTGATAAATTAGGTGTTATTGCTGTATCTGCAGAGGGTGCAGAACCAATAGGTTCACACTTTCCACCACAAAACCCTGCCTATATTGATTTAAGTAATGCATATCCATATGATGTGGCAAAAGCAAAAGACTTATTAAAACAAGCAGGGGCAGAAAACTTAGAATTAACATTTATGGTTCCGCCGTCCTACGGTCTTTCATCTGAAGTAATTGCAGATTATTTGCGTAAAGTAGGTATTAAGGTAACATTAAAAAGTGTTGATTGGGGTACTTGGATTGCGATAGCATATAAAAAGCATGAATATGATATAACAATAGTTTCACATGTTGAACCACGCGACTATGGTATTTATGCAAAGCCTAATTATTACTTTGGTTATCATAATCCAAATTATAACAAGCTATTGGAAAAACTTAATCTTACAATAGATACTTTATCACGAAGGAAAATATTGCAAGATATACAAAGAATGTTATCAAAAGATGCTGTTAATGTTTGGTTATATCAAATGACTAAAGTTGGTATATGGAATAAAAAATTAAAAGGGCAAGGTGCAATTACTGCACGATATACAAAAACTGCGTTGGGTGAGATTGTGAATAAAGACTTTATCCACTTTGCTCAGGTGCGTGGAATGACAAAAGGGAAGTTGGGATTTTTATATCAAAACAGTAAGGAAAGCTTGTCGCCTGCATATACTATTTTATCACAAGCAATAGAAGGTGTTGGTGATAGAAAAAAAGCGATAAACTGGTTTGATAAAGTTGATATTAAGCAGGGTGAGACAATTGGAATTTATGGTCGCAGTGGAATTGGCAAGACAACCTTACTGCGTACAATAACAGGTCAATTATTACCAAAGATAGGTATTGTTAAAAAAATTAAATCGCTACAGGTAATTTTTCAAAATGCCAAGTCGGCATTGAATCCTAAGTGGACAGTATTTGCTAGTATAGCGGAGCCAATTGTAGGAACAATGTCCGAAGGTGATGTAAAGAAAAAAGTACTTAAAATGCTAGAAATGGTTGAAATTGAAAAGGACAGAGCTTATGACACACCAAATATTTTGTCTGGTGGTCAATGCCAACGTGTATGTATTGCAAGGGCATTCATTAGTAACCCTGATTTAATTTTGGCCGATGAAATGACATCGGCATTAGACTCAGAAACAACAGATAAGATATTAAAAATATTAATAGAAATGCAGAAAAAAACTAAAATATCATTACTGTTTGTATCGCACGATGAAAATGCATTAAAGCAAATATGTCACCGTATAATTAAATTTTAA

Transcript

WZF232960.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00496	SBP_bac_5	Bacterial extracellular solute-binding proteins, family 5 Middle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000914	Domain	Solute-binding protein family 5 domain	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR023765	Conserved_site	Solute-binding protein family 5, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039424	Family	Solute-binding protein family 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30290	PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030288	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:1904680	Molecular Function	peptide transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-