Gene detail

Detailed information of WZF231830 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF231830	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	chr15	13124172	13286883	-

Gene Structure

More details in Jbrowse Sequence

CDS

WZF231830.1

ATGAAAAGCCGATTCAGTACTATCGACATAAAGTCGATTGTCAAGGAACTACAAAGGTTTCTTGGCATGAGAGTGCTCAATGTGTATGATGTGGATAATAAAACATACCTGATCAGGATAGCCAGGCCCGATGAAAAAGGAGTGATACTTGTCGAGTCTGGCACACGGCTCCATAGTACGGCCTTTGACTGGCCAAAAAATGCAGCCCCCTCCGGCTTCTCAATGAAGCTTCGTAAGCACTTAAAAGGGCGTCGCCTTGAACACGTAGATCAGCTCGGTGTGGACAGAATAGTAGATTTACAGTTTGGCTCAGGAGAGGCTGCCTATCATGTGCTTGTTGAGATGTATGACAGGGGTAACATTGTGTTGACCGACTTTCAATATACGATTCTAAATATATTGCGGCCCAGAACTGATGATTCGCAGGATGTCCGCCTGGCTGTCCGTGAGACGTACCTTATTAACACAGCTATTGAATATGAACACATCACAGAAGAAAGTGTGGTAGAACTGCTTGTCAAGTCAAAAGATGGGGACATTTTGAAGAAAATACTTGTTTCACAGCTCGCGTTTGGACCAGCAATCGTAGAACATTGCCTTTTGATGGCCGGATTCACAGAAAATGTCAAGATTGGAAATGGATTCACAATCGCAGCAAATTTGCAGCAGTTGATGGGGGCACTGAAACAAGCGGAGACATTGTTCTTCCAATTATCATCACAGCCTAACAAGGGCTATGTCATACAAAGGAGAGAAAAAAGAGCGAATGTGAAGGATGGAGAGAGTCCAGATCTGCTTACATATGATGAGTTCCATCCATACCTGTTTCAACAATACATGAAGAGACCTTATCTCGAGTTTGACACATTCGCAAAGGCTGTTGATGAGTTTTATTCTCAGTTGGAAAGTCAGAAGCTTGATTTAAAAGTTGTGCAACAGGAAAAATCTGCTTTGAAGAAACTGGAGAATGTGAGAAAAGATCATGACAAACGCATCCTTGTGCTTAAAACTGAACAGGAATTGGATATCAAGAAAGGAGAGCTGATAGAATTAAACCTGCAGTTGGTTGACCACGCAATATCTATTGTAAGAAGTGCTCTCGCTAACCAGATAGACTGGACAGAGATCTGGAGTCTTGTCAAAGAAGCACAACTTCAGGGTGATCCTGTTGCCATGACAATTAAAGGGCTGAAACTGGACACAAATCACATCACCTTACTGCTCAGGAACCCATACTTGGAACATTGTGAGGCTATTGATCTGGATGAAGTTGACCGGCCACAGAAGGTGGATGTGGACCTGGCACTTAGTGCTTATGCAAATTCAAAGAGGTTCTTTGATAAGAAAAAGCACGCAGCTCAGAAAGAACAGAAAACAGTTGATGCCTCGTCAAAGGCTTTGAAATCTGCAGAGAGGAAGACCAAACAGACATTGAAGGATGTTGCCACGGCAGCCACTATCAACAAGGCGAGGAAAACATTCTGGTTTGAGAAGTTTCTGTGGTTTATCAGTTCTGAGAACTACATGGTCATTGGCGGCCGTGATCAGCAGCAGAATGAATTCATTGTAAAGCGATACTTCAGAGCCGGTGATTTATACGTACATGCAGATCTTCACGGCGCAAGCAGTGTCATCATAAAAAATCCAACAGGTGAGCCGGTTCCACCAAAGACTCTGAACGAGGCTGGTACCATGGCGCTATGTCACAGTGCAGCGTGGGATGCGAAGGTCGTTACTAGTGCATGGTGGGTACATCATGATCAGGTGTCGAAAACGGCACCAACAGGAGAATATCTCACTACTGGAAGCTTCATGGTTAGAGGAAAGAAGAATTATTTACCGCCTTCGCACTTAATTTATGGCTTTGGACTGCTATTTCGGCTGGAAGAGGGCAGTATCTTCAGACACACTGGGGAAAGAAAGATTCGCAGCTCAGATGATGATGATGAAATTTCAATCTCAGATTCTATGGCAACTGAAAGTGAATTTACTTCAGAGACACTAAGTGATGTAGCTGAGGAGGAGGTAGAAGATGTGGTTGGTGATGGGCAGGAGTTTTCAGACTCGGATAGTGATGATGATGATGATAATTCTCAAGCATCTCAGGAGGACAATAATCACCATCATGATGAGAAGCAACAGCAGCTAGCAAATAATGATGGTAACGGACCTAATAAAGCCATGGATACAGCAAAGACAAATGATGAAATGGGTGAAAATACCGAGGATGATGAAGATGATGACAATTTATTTCCAGATACAACTATAAGTTTAAAACCTCTTACTGCTGAAAAGTTTTCCTTACAGCGAGCGACAAGTGTAACAAGCACATCAAGTCGGACATCAGCTCCTGAAATAGAGGAGGGAGATCGTGAGACTGACTTACCCTCAGGAATGTCAGATGATGCTGTGACAGTTTCAACTGGGAGACTTTCTGCAAAGCAAAGGAGAGAATTGAAAAAACATAGAAAAGGACATGTTCAGCAAGCTCTGGATCCACAAGTTCATCAACCTGTACCACAGGTATCACCTGAGCTGCAATGTTCGACACCTCTACTTTCAGAAAGTCAGCAGACTCCTATTTCCCAGACATCGTTACCTGATGGAGATGGCATCCCAGACAGGACAGAGCAAAAGCAGCATCAGCCACAACAACAACTTAAACGTGGACAAAAGAGTAAACTGAAAAAGATCCGTGACAAATACGCTGATCAGGATGAGGAGGAAAGACAACTCAGATTGGAAATTCTTGCTTCCTCTGGACCTCAGAAACCTGACAAGAAAGCCAAAAAGGGAAAAGATGGTAAAACAAAAGGAGGTAAATCTGGACAGCCTCAACAACAACAGAAGCAAGTGAAAGGTAAACCTACTTTGCAACCATTGAAACCAGAAGCGGGTGATTTGATTCTGCAACCAGAAGCGGTTGACTTGAAACTTCAAGATTCTACTGTGAAAATTGAGAACACCAATCAGGACAGTTTGAAGACAGGTGTTGATTCATCAGCAGCAAATAGTAAAGATATAAAGCCTGAACAGGGTGCAGTATCAGATGATGAAGAACACCAGGATGAGGAAACACAACAACAAACTGATGACAATCAAGTGATGGACTCACTGACCGGATGTCCAGTTACTGAAGATGAGCTTCTGTTTGCAATCCCTGTATGTGCTCCATATCAAACTATGCATAACTATAAATTTAAGATAAAATTGTTACCTGGCAGTACCAAGAGAGGAAAAGCTGCCAAATCTGCACTGAACATGTTTCTGCATGACAAAGCCATTGTGGCACGTGAGAAAGACCTCCTCCGGATGCTAAAGGATGTAGACTTATCAAGACACATTCCTGGGAAAGTGAAACTAGCCGCTGCCAATCTACAGAAACAGAAGAAACGGAAATAA

Transcript

WZF231830.1

CATACGTTCTCTTTCATAACATTTTGACATGACGTTTCATTTAACGTTTTACAGTGCCTAAACTCGTTTTAATTCTCTCTTCAGCAGATTATTGAAAAATGAAAAGCCGATTCAGTACTATCGACATAAAGTCGATTGTCAAGGAACTACAAAGGTTTCTTGGCATGAGAGTGCTCAATGTGTATGATGTGGATAATAAAACATACCTGATCAGGATAGCCAGGCCCGATGAAAAAGGAGTGATACTTGTCGAGTCTGGCACACGGCTCCATAGTACGGCCTTTGACTGGCCAAAAAATGCAGCCCCCTCCGGCTTCTCAATGAAGCTTCGTAAGCACTTAAAAGGGCGTCGCCTTGAACACGTAGATCAGCTCGGTGTGGACAGAATAGTAGATTTACAGTTTGGCTCAGGAGAGGCTGCCTATCATGTGCTTGTTGAGATGTATGACAGGGGTAACATTGTGTTGACCGACTTTCAATATACGATTCTAAATATATTGCGGCCCAGAACTGATGATTCGCAGGATGTCCGCCTGGCTGTCCGTGAGACGTACCTTATTAACACAGCTATTGAATATGAACACATCACAGAAGAAAGTGTGGTAGAACTGCTTGTCAAGTCAAAAGATGGGGACATTTTGAAGAAAATACTTGTTTCACAGCTCGCGTTTGGACCAGCAATCGTAGAACATTGCCTTTTGATGGCCGGATTCACAGAAAATGTCAAGATTGGAAATGGATTCACAATCGCAGCAAATTTGCAGCAGTTGATGGGGGCACTGAAACAAGCGGAGACATTGTTCTTCCAATTATCATCACAGCCTAACAAGGGCTATGTCATACAAAGGAGAGAAAAAAGAGCGAATGTGAAGGATGGAGAGAGTCCAGATCTGCTTACATATGATGAGTTCCATCCATACCTGTTTCAACAATACATGAAGAGACCTTATCTCGAGTTTGACACATTCGCAAAGGCTGTTGATGAGTTTTATTCTCAGTTGGAAAGTCAGAAGCTTGATTTAAAAGTTGTGCAACAGGAAAAATCTGCTTTGAAGAAACTGGAGAATGTGAGAAAAGATCATGACAAACGCATCCTTGTGCTTAAAACTGAACAGGAATTGGATATCAAGAAAGGAGAGCTGATAGAATTAAACCTGCAGTTGGTTGACCACGCAATATCTATTGTAAGAAGTGCTCTCGCTAACCAGATAGACTGGACAGAGATCTGGAGTCTTGTCAAAGAAGCACAACTTCAGGGTGATCCTGTTGCCATGACAATTAAAGGGCTGAAACTGGACACAAATCACATCACCTTACTGCTCAGGAACCCATACTTGGAACATTGTGAGGCTATTGATCTGGATGAAGTTGACCGGCCACAGAAGGTGGATGTGGACCTGGCACTTAGTGCTTATGCAAATTCAAAGAGGTTCTTTGATAAGAAAAAGCACGCAGCTCAGAAAGAACAGAAAACAGTTGATGCCTCGTCAAAGGCTTTGAAATCTGCAGAGAGGAAGACCAAACAGACATTGAAGGATGTTGCCACGGCAGCCACTATCAACAAGGCGAGGAAAACATTCTGGTTTGAGAAGTTTCTGTGGTTTATCAGTTCTGAGAACTACATGGTCATTGGCGGCCGTGATCAGCAGCAGAATGAATTCATTGTAAAGCGATACTTCAGAGCCGGTGATTTATACGTACATGCAGATCTTCACGGCGCAAGCAGTGTCATCATAAAAAATCCAACAGGTGAGCCGGTTCCACCAAAGACTCTGAACGAGGCTGGTACCATGGCGCTATGTCACAGTGCAGCGTGGGATGCGAAGGTCGTTACTAGTGCATGGTGGGTACATCATGATCAGGTGTCGAAAACGGCACCAACAGGAGAATATCTCACTACTGGAAGCTTCATGGTTAGAGGAAAGAAGAATTATTTACCGCCTTCGCACTTAATTTATGGCTTTGGACTGCTATTTCGGCTGGAAGAGGGCAGTATCTTCAGACACACTGGGGAAAGAAAGATTCGCAGCTCAGATGATGATGATGAAATTTCAATCTCAGATTCTATGGCAACTGAAAGTGAATTTACTTCAGAGACACTAAGTGATGTAGCTGAGGAGGAGGTAGAAGATGTGGTTGGTGATGGGCAGGAGTTTTCAGACTCGGATAGTGATGATGATGATGATAATTCTCAAGCATCTCAGGAGGACAATAATCACCATCATGATGAGAAGCAACAGCAGCTAGCAAATAATGATGGTAACGGACCTAATAAAGCCATGGATACAGCAAAGACAAATGATGAAATGGGTGAAAATACCGAGGATGATGAAGATGATGACAATTTATTTCCAGATACAACTATAAGTTTAAAACCTCTTACTGCTGAAAAGTTTTCCTTACAGCGAGCGACAAGTGTAACAAGCACATCAAGTCGGACATCAGCTCCTGAAATAGAGGAGGGAGATCGTGAGACTGACTTACCCTCAGGAATGTCAGATGATGCTGTGACAGTTTCAACTGGGAGACTTTCTGCAAAGCAAAGGAGAGAATTGAAAAAACATAGAAAAGGACATGTTCAGCAAGCTCTGGATCCACAAGTTCATCAACCTGTACCACAGGTATCACCTGAGCTGCAATGTTCGACACCTCTACTTTCAGAAAGTCAGCAGACTCCTATTTCCCAGACATCGTTACCTGATGGAGATGGCATCCCAGACAGGACAGAGCAAAAGCAGCATCAGCCACAACAACAACTTAAACGTGGACAAAAGAGTAAACTGAAAAAGATCCGTGACAAATACGCTGATCAGGATGAGGAGGAAAGACAACTCAGATTGGAAATTCTTGCTTCCTCTGGACCTCAGAAACCTGACAAGAAAGCCAAAAAGGGAAAAGATGGTAAAACAAAAGGAGGTAAATCTGGACAGCCTCAACAACAACAGAAGCAAGTGAAAGGTAAACCTACTTTGCAACCATTGAAACCAGAAGCGGGTGATTTGATTCTGCAACCAGAAGCGGTTGACTTGAAACTTCAAGATTCTACTGTGAAAATTGAGAACACCAATCAGGACAGTTTGAAGACAGGTGTTGATTCATCAGCAGCAAATAGTAAAGATATAAAGCCTGAACAGGGTGCAGTATCAGATGATGAAGAACACCAGGATGAGGAAACACAACAACAAACTGATGACAATCAAGTGATGGACTCACTGACCGGATGTCCAGTTACTGAAGATGAGCTTCTGTTTGCAATCCCTGTATGTGCTCCATATCAAACTATGCATAACTATAAATTTAAGATAAAATTGTTACCTGGCAGTACCAAGAGAGGAAAAGCTGCCAAATCTGCACTGAACATGTTTCTGCATGACAAAGCCATTGTGGCACGTGAGAAAGACCTCCTCCGGATGCTAAAGGATGTAGACTTATCAAGACACATTCCTGGGAAAGTGAAACTAGCCGCTGCCAATCTACAGAAACAGAAGAAACGGAAATAACGTGACCCTTTATCCCTCAAATTAGTTTAAGAAAATTTCAAGTTTTATCAGAAAATTTTGGTTTGCATACCATGAGATTATTCTTCAAAATTTACCCATCAAATTACAGGCTCAACATCCAGTCATTCCAGTTGTAAATTTTCTAAAATAGTCCTCTCTTGGTCTGTAGATGGACATTTCTCAAGATGAGTGTAGAAGTCACCTCTGACTAATTTGAGTGTTAAAGAATTAAATGTGTCCACTTGTACATAGTAGGCAAGGAGCTTGTGTGTATGAGTGCATGCATGCATGAGTGTGTGCGTGCGTACGTGAGTGTGTGCGTGCGTACGTGAGTGCATGAATTGATGAAAATGGAAGGACTACCTGGTGCAATTTTTAGTCACATATTCATGTATATATCTGCCTGATATGCGGATATATTTGTTAAAGATTGCGTATATTTACTCTGAACATTGCGTCAAATTTAAATCATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05670	NFACT-R_1	NFACT protein RNA binding domain	Domain	Interproscan
PF05833	NFACT_N	NFACT N-terminal and middle domains	Family	Interproscan
PF11923	NFACT-C	NFACT protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008532	Domain	NFACT, RNA-binding domain	Interproscan
IPR021846	Domain	NFACT protein, C-terminal	Interproscan
IPR051608	Family	Ribosome Quality Control Complex Subunit NEMF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15239	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-