Gene detail

Detailed information of WZF229950 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF229950	ENDONUCLEASE III-LIKE PROTEIN 1	chr14	69361035	69418108	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF229950.2

AACAGGAGGAATATACAGAGCAAGAAGAAAATAAGTATTTTTCACGAAATAAGGATTAAACCTTGTAAATACGATTATCTATGTTTTTAATCTCTGAAATATTTTAATAAGCAATGTTATCAATCTATGCTGCTTTTTTCGTCAGACTAAGAAAGTGTCCAAGTCCTTTAATTTGAAGCCACACTGAATGCACGATATCAAAGTTACAGTACATAGAATCACTATTTACCATGAGTTTGGATAACAGTGTTTCTCCATATTTCCAAAATCGTGATGCTGGAGAAATGCAGAGATTAACAAGAGCTTCCTTGAAGCTGTTGAAGAGAGCATCGGAAGTAAGACAACAGCAAAGAGCATGCAAGATGAACCTGGACGATCAACTCAGAGATGGTGATTCTGCTCCGAGTAAGAAACTAGCCATCAACAGAAAGCGGTGTCTTGTCCCTCCTGTCCTATGTGATGATGAGAAGTTTGCAGAACAAATTATCAAAGTTGAAGTGGACGATCATGCAGCTTATTCTACGCATAATGATACGGTGAAAGTGGAACATGTATCAAGCTGTACATTGCAGCATGGGCATGAACAGGTGAAAACAGAGCCAGTGTCAGGTTGTACATGGCAACCACCCTTAAAGCAGGAACAGGTGAAAACAGAGCCGGTATCAAACTGTACATGGCAACCACCCTTATGGCAGGAACAATGGAAGAATGTAGAACATATGCGACGTCATCGAGATGCTCCTGTAGATACCATGGGCTGTGATGTCATCAGCGATGCCACAGCATCCCCTCAGGTCTATCGCTATCAAGTACTCCTTGCTCTAATGCTATCAAGCCAAACTAGAGACCAGATTACCTCGGCTGCTATGGCACAGTTAAGAAACCATGGATGCACACCTCTGAGTATCAGTAGAACCTCCAACAAGCAGCTTGGAAAACTAATTTATCCAGTTGGATTTTGGAAGAGAAAGGTTGAATACATAAAGAGGACCACCGAGATTCTGCTTGATAAGTATTCGGGTGATATTCCATCATCAGTGACAGAACTTTGTGCACTGCCAGGCATTGGCCCAAAGATGGCACATTTGGTGATGAAGACTGCGTGGCATGAGGTCACAGGAATTGGTGTCGACACCCATGTACATCGCATCAGTAATCGCCTGGGCTGGGTGAAGCATGTTACTAAGCAACCAGAACAGACGCGGAAAGAACTTGAAGACTGGTTGCCTAGAGAATTATGGCCTGCTATCAATCACTTGCTTGTTGGCTTTGGTCAGCAGATCTGCCTTCCTGTCTACCCACGGTGTGCCCATTGTCTAAACTCGGACATCTGTCCAGAAGGGAGAAAGACATTGAAATCAACAGTGAAAATTCACAAGCCGAAAAATCACAAACTGGATGTATCATCTAGAAATTAATTATTAGTGAATTGATTTCAACCACTTAACCCTCGAATTTATTCAAACAAATTAAATTTTCTCATAGAAAATGTCCATTTGCAGACCAAGAGACTATTTTTGAAAATTTACCACTGGAATGACTGGCTGGATAACTGAGCCAGTCATTTCAGTGGTAAATTTTCAAAAATAGTCTTCTCTTGGTATGCAAATGGGCATTTCCTAAGATCACTACCGAAGTAGTTTTTGGCTGATATGATTGTTAAAGGATTAAACTGCTTCATTCAATATACCATATTGATACTTAAAATTAGCTTCAAAATGTTCAACTGAATATTCCCTACATCATAAAGAATTTGTCATTTCTGTTCTGTGAGTGTTAAAGGGTTGAATGCCATTCAGTTGGAAACTATGGAGTAGGCCAATGTGTTATTAGTGGTCCAGTATGGAGGGACCCATTTATAGCTATGCCACACCCATTTCTAGTGAAGATCCACCCACTCTGTGTGCGTGTTAGAAAAATCGATTTATATACGCTGAAACCTTAATTCCAATTTTAAGGGAATTTACCGGTAAGCTGTTAAATATTTTGGAACTAATTTGACTGGGAACTGTTCCCAAACAGTTTATTAAATTGTAAAATGCACCAAGGACATATAATTCGTACACCCTCATGACAGACTTTTCGAGTTTCGTGAAGGAGTTACTTCATTATATAACGATTAGCATGTCCGTTGTCTGTCTGTCCACCCGTCCATCCATCTGTCCGTCTGTCCCGGTCTTGTCAACTCAACTCCTAGAGGTCTCAATGAATTAACTTAAAATTTTGTCCATATTATCAGTATCATGTGCATGTGCTTTTTTTGCGGCCAAAAAATTGGTCATTACAGAGTTATCCCCCTTTAAATATCTTAAAGCCGATACATAAACTGCATTGCCAACCATTTTTTTCAACGCAACTCCTACAGTATAGCTCCGTTTCTTTTGAAACGTGGTAAGGCTTATCATTACCATGTGAAGGTGTGCATGTGCTATCCATATACCTGTACACCCATCTGTCTGTCCAAAATGTATGTATGTCCATCTGTCAGTCCATCCATCTCTGACAATAATTTCTTGTCAACGCAACGTCTACAGTTTAACTTCTTTTGAAACTTGGTAAGTGTTATCATTATGACATGAAGATGTGCATGTGCTATGCATATACTTGTATGTCCATCCGTCTGTCCCTAATGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00633	HHH	Helix-hairpin-helix motif	Motif	Interproscan
PF00730	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000445	Conserved_site	Helix-hairpin-helix motif	Interproscan
IPR003265	Domain	HhH-GPD domain	Interproscan
IPR011257	Homologous_superfamily	DNA glycosylase	Interproscan
IPR023170	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan
IPR030841	Family	Endonuclease III-like protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43286	ENDONUCLEASE III-LIKE PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000703	Molecular Function	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0006285	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0006296	Biological Process	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	Interproscan
GO:0019104	Molecular Function	DNA N-glycosylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-