Gene detail

Detailed information of WZF229660 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF229660	AP ENDONUCLEASE	chr14	67717409	67719987	-

Gene Structure

More details in Jbrowse Sequence

CDS

WZF229660.1

ATGGCAACCTATAAGCGTACCCTAAGCCTTAAGATAACAACTAAGGGGTGGGGTGTCACGGCTATCGACGTGTATCATGGGTTAAAGGACGTCGTTGGCGCGGGACCTGCTGCTTTGCAGGGGCTTATCAATGTTTCTAAAACTGTATGGAATGTAACAGTGTCAAATGAGTGGGTCAAGAAAAAGCTTCTAGAAGATGTTCTTATTGTAAAAGGCGAAGTTTGTAACGTAGAGGAAATCGAGTCAGATAGGTTGCTAGTGAAGATGAAAGTTCCACTAGAAATTCCAGATGACAGAATCATGAATGAACTCAAGAAGTATGGCAAAGTGCAAAAGATTGAACGGGAAACGTATCCCTTTGACAGAACGCTAGAAAACGGTGTAAGACGCATCTGGTTTGATAAAGTGGATAGCCCGTTACCAAGCAGATTGACGCTTGATGGCAGCTTTGTCCTGCCCTTATGGTATAGAGGGCAAATTAAAGAGTGCCGGATCTGCCTAAGTACTGACCATTTGGCAACAGATTGTCCCAATCGAAACAAATGTTTGCTCTGTGGTTCAGTTGACCATTTTAAATGGCGCTGTCCAAAAAATCAAAACAAGCCCTCAGTATCAGGAGATAATCGCCCATTAAAGGATGCAACTGAGTCAAATGCTTCTGGAGCAATCACTACGGAAGCTGTTGTTGTGGTTCATGCCACTGAAAATGACACAAACAAATCATCAAATCCTGTTAAAGTAACTACAGTTGATGAAATTCAAGTATTAGAGGAGGGTATAACCTTAAGTCAAGAAAATAATCAAAATGCAGTGGAGCCAAACGTGGCTGTAAAAGACACGCAGGAAAATGATGATCTTACAGAAGAGCCAGTTTACAATTCCTTAGAAGATGAATTAAAATTAGGACAGGATAAGTTTAGGACTCAGAAGACGGAAAGTTCAGTTGATTTTCCGCTAAGCCCACTTGATTTAAGTCAGCTTGAAGATATGGTAAATGACGCTCCTGCCAAATGTAACTTAAGTAGCAATAAGCGTCATAAAGAAGACAATAGCTCAGAATCTGAGATTGAAGTAAATGATATGGATGATGATACAATGTCAGTTGCAGAATCAGATGTGTCCATTCAAACACAGAGTTCACAGATGAAAGATGAAATGGTAATGTACCGATCAGAAGGGGGTGAAGTGTTAGTGCCATATGTAACGGCGAGAGGCGTGAAATATCGTCTACTGCGCCATGATTCTGATATTTCCAAATATGAATATTTGTCTGTGGTAGAACTAGGAAACATTGAATTCGCAGGAAAATTAGGTAAATGGTCTAAGAAACGAGCTAAAAAACCAAATCAAGTTAATCTAATGATGGCGGTTGTAAACATCATTTTACAAATTATGATTATCTGCACCATCAATTGCAGAGGATTAAATACCGAATTCAAGCAGCGCCACTTGCTTGAAGAATTAGCAAATGAGAGAGTTGATATTGCTTTTCTACAAGAGACCAAAATTCAAAAAATTGAAGTGTATGAATCTCTCAAAGATATTTCAAAAGGGCAGATTTTTTATTCTTTATCACAAGATAATAGCGCGGGAGTGGCCATTCTTATCCTGCCCCGCTGTCTCAACTATGTTGATGTTATATCGTCGTCATCAGATACAAATGGACGATGGATTTGTGTATCAATTGATGTACTAAACACAAGTTTAAATTTGATGTGCCTTTATGCGCCAACCTCTCATCAATTGCGTCGTGAATTTCTAAATGATGTTTCCACAATAATTCAAGACAGAACGCCTGAAAACCTAATTATGGGCGGTGACTTTAATTGCATATTAGATGAAGTTAAAGACAGAAACGCTAGGTCTAATTTTAATGACACATCTCATAATATTTTGAAACACATCTGTGAATATAAAAGCTTGTTAGACACTTATCGGATTGAAAATCCAGAGGGCAGGGACTTTACTTGGTTTTCAACCGATGGAAAGAAAGCATCCAGATTGGACAGGATCTATGTAGAACGATCATTGAAAGGTTACATGTGTAAAACTAACATAAAACCAGTAACTTTCTCTGATCACAATATGTTTTCCATCACATTAGACAATGCTGACTGGATCAAACGAGGAGATGGATTTTGGAAACTCAATGTAGCGTTGTTACGAGATAGTTGCTATCGCAAATGTGTAGAAAGTTGTTGGAGGCATTGGGATGAAAAGAGAAGTTTGTATGAATGTATAACAGACTGGTGGGAGGATGTTAAATCTGACCTGAAACATATTTCAAGGCAGTATTCCATCAGGAAAGCACGAGAAATGCGAAAGCGTAAAAAGGCGCTTCAGCGGTCGGTGTGTAAAATTAATAAGAAAATTAAT

Transcript

WZF229660.1

TAGGTGTTAGTGAACCACTTAGAAAGTGGTTCAAACTAACAAATATACGACTGTACTCTCTATTCGTATATTTGTTGGTAGACGTCAGGGTTTCAAAAGGGGACACTATTTATTTAGTGTTTAGCTCTTTCCCCGACGTCTTGGTGTTATATTTTTGTATTATATATTGTAGTAGTATGGGTTTCCTCTTTTTATAAAACACCATGGCAACCTATAAGCGTACCCTAAGCCTTAAGATAACAACTAAGGGGTGGGGTGTCACGGCTATCGACGTGTATCATGGGTTAAAGGACGTCGTTGGCGCGGGACCTGCTGCTTTGCAGGGGCTTATCAATGTTTCTAAAACTGTATGGAATGTAACAGTGTCAAATGAGTGGGTCAAGAAAAAGCTTCTAGAAGATGTTCTTATTGTAAAAGGCGAAGTTTGTAACGTAGAGGAAATCGAGTCAGATAGGTTGCTAGTGAAGATGAAAGTTCCACTAGAAATTCCAGATGACAGAATCATGAATGAACTCAAGAAGTATGGCAAAGTGCAAAAGATTGAACGGGAAACGTATCCCTTTGACAGAACGCTAGAAAACGGTGTAAGACGCATCTGGTTTGATAAAGTGGATAGCCCGTTACCAAGCAGATTGACGCTTGATGGCAGCTTTGTCCTGCCCTTATGGTATAGAGGGCAAATTAAAGAGTGCCGGATCTGCCTAAGTACTGACCATTTGGCAACAGATTGTCCCAATCGAAACAAATGTTTGCTCTGTGGTTCAGTTGACCATTTTAAATGGCGCTGTCCAAAAAATCAAAACAAGCCCTCAGTATCAGGAGATAATCGCCCATTAAAGGATGCAACTGAGTCAAATGCTTCTGGAGCAATCACTACGGAAGCTGTTGTTGTGGTTCATGCCACTGAAAATGACACAAACAAATCATCAAATCCTGTTAAAGTAACTACAGTTGATGAAATTCAAGTATTAGAGGAGGGTATAACCTTAAGTCAAGAAAATAATCAAAATGCAGTGGAGCCAAACGTGGCTGTAAAAGACACGCAGGAAAATGATGATCTTACAGAAGAGCCAGTTTACAATTCCTTAGAAGATGAATTAAAATTAGGACAGGATAAGTTTAGGACTCAGAAGACGGAAAGTTCAGTTGATTTTCCGCTAAGCCCACTTGATTTAAGTCAGCTTGAAGATATGGTAAATGACGCTCCTGCCAAATGTAACTTAAGTAGCAATAAGCGTCATAAAGAAGACAATAGCTCAGAATCTGAGATTGAAGTAAATGATATGGATGATGATACAATGTCAGTTGCAGAATCAGATGTGTCCATTCAAACACAGAGTTCACAGATGAAAGATGAAATGGTAATGTACCGATCAGAAGGGGGTGAAGTGTTAGTGCCATATGTAACGGCGAGAGGCGTGAAATATCGTCTACTGCGCCATGATTCTGATATTTCCAAATATGAATATTTGTCTGTGGTAGAACTAGGAAACATTGAATTCGCAGGAAAATTAGGTAAATGGTCTAAGAAACGAGCTAAAAAACCAAATCAAGTTAATCTAATGATGGCGGTTGTAAACATCATTTTACAAATTATGATTATCTGCACCATCAATTGCAGAGGATTAAATACCGAATTCAAGCAGCGCCACTTGCTTGAAGAATTAGCAAATGAGAGAGTTGATATTGCTTTTCTACAAGAGACCAAAATTCAAAAAATTGAAGTGTATGAATCTCTCAAAGATATTTCAAAAGGGCAGATTTTTTATTCTTTATCACAAGATAATAGCGCGGGAGTGGCCATTCTTATCCTGCCCCGCTGTCTCAACTATGTTGATGTTATATCGTCGTCATCAGATACAAATGGACGATGGATTTGTGTATCAATTGATGTACTAAACACAAGTTTAAATTTGATGTGCCTTTATGCGCCAACCTCTCATCAATTGCGTCGTGAATTTCTAAATGATGTTTCCACAATAATTCAAGACAGAACGCCTGAAAACCTAATTATGGGCGGTGACTTTAATTGCATATTAGATGAAGTTAAAGACAGAAACGCTAGGTCTAATTTTAATGACACATCTCATAATATTTTGAAACACATCTGTGAATATAAAAGCTTGTTAGACACTTATCGGATTGAAAATCCAGAGGGCAGGGACTTTACTTGGTTTTCAACCGATGGAAAGAAAGCATCCAGATTGGACAGGATCTATGTAGAACGATCATTGAAAGGTTACATGTGTAAAACTAACATAAAACCAGTAACTTTCTCTGATCACAATATGTTTTCCATCACATTAGACAATGCTGACTGGATCAAACGAGGAGATGGATTTTGGAAACTCAATGTAGCGTTGTTACGAGATAGTTGCTATCGCAAATGTGTAGAAAGTTGTTGGAGGCATTGGGATGAAAAGAGAAGTTTGTATGAATGTATAACAGACTGGTGGGAGGATGTTAAATCTGACCTGAAACATATTTCAAGGCAGTATTCCATCAGGAAAGCACGAGAAATGCGAAAGCGTAAAAAGGCGCTTCAGCGGTCGGTGTGTAAAATTAATAAGAAAATTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR004808	Family	AP endonuclease 1	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22748	AP ENDONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008311	Molecular Function	double-stranded DNA 3'-5' DNA exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-