Gene detail

Detailed information of WZF185220 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF185220	CELLULAR TUMOR ANTIGEN P53	chr1	89946039	89998119	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

WZF185220.2

CACTCACATTTTGTCGCTGTAATGAAAACATCGGGAGCAGGCGGCTGTCTGTTTTTGACAGCCAAATTCCGCGTCTGTGTCACATCTTAATTTATCTAATGGAATTTTTTATTATCTAGTCGAAAATCATTTTCATCGAAAATAAACCCATCATATATAAAGATGTCTCAACCTGCATCTTCTAGTACGCCAAGCTTGCTATCAATGCCTCAAGAAACATTAGACTGTTTGTGGAAGTCACTTGGTGACGTGACCGAGCACGGCGGTTCATATACACAAATCATGACACAAGATTTTGATTATGATTATGAGGGTGACGAGAATACATTTCATTTAGAAGGCTACCAAATCAAACGTACTGAAAGTATGGGTGACTATTTAAACCCGATCATGTCAAATAATGCTAACATGAGTCCAGATAGCCAGGCTCATATGCTTGGTGCTCAGAGCCCGTACAATGATGGGGGCATTGGGTCACCATCATATTCTCCTGTCAGTCTCCAGTCACCGATTCCATCTGTACCATCAAACACTAACTACGCTGGTGATTATGGATTTGAAATCTCATTTGCTGAACCATCAAAAGAAACCAAGTCCACAACATGGACATACTCAGAACTCTGCAAAAAGCTGTATGTCCGTATGGCCACCACATGCCCCGTGCGCTTCAAGAGTGTCCGACAGCCGCCGCCAAACTGCGTGATTCGCGCCATGGCGATATTTATGAAACCAGAACATGTTCAAGAAGTCGTCAAAAGATGCCCGAATCATGCCACATGCAAAGAACATAATGAAAAGCACCCAGCACCTACTCACCTGCTACGTTGTGAACATAAGCTAAGTCATTACGAGGATGACAGCTATACTCAACGACAGAGCGTCATCATTCCTCATGAACCACCACAAGCCGGTTCTGAATGGGTGACGAATCTGTTTCAATTTATGTGCCTGGGATCATGTGTTGGTGGTCCAAACAGACGGCCGATCCAGATTGTCTTTACCCTAGAGAAGGACAACAAGGTATTGGGACGACGTGCTGTCGAGGTTCGAATCTGTGCCTGCCCTGGCAGGGATAGAAAAGCGGACGAGAGAGTGATGGCGCCAATTGGCAAAGCTATGCCAAAGAAAATGCTTCCAGGAATGCCAAAGCTGATGCTCGGAACTGAAATAACGACTGTGAGCAAGAAGCGGAAGATCCCCGATGATGAGATATATACGCTAACTGTACATGGCCGTGAAAATTTTGATGTTTTATGTAAACTGCGGGATTCACTTGAATTGGCTGCGATGGTGCCACGTCAACAGCTAGAAGCTTATCGTCTCAAGCAAAATGAACTACAAAAACAACTCTGGTCTGCTCTGCTTGGATCTGATGGGACTGTAGGGCAAGATGGGGCAGTTAAAGATTCATCGTCGTCCTCATCATCATCGTCATCATCATCGTCTTATTACTACAAACACGACAAGAAAAAACACAGCAAAAAACATGGAAAAATCCACCGATATAATCGATAAATAGTTCTTGCTTGTTGTGTAGTTGCTAGAAGCATAATAGGATTCATTTTACATCTATTGTCAATTAAGATTTCTAAAATATTTATGCATTTTCTATGCACATTGTTAACTGAATTATAGATATTTAAGTGTTCAAATTGCCACTCTCAGAAGAACTTCTAGATCTGAAATAATGAGCTATTTCTTTGATATCCAGCGCGATGATAGAACACCTGGTTTAAGCCTTATTTATTGCTTTGTGTGCTTCACGCTTTTGTTTGCTTGCTTGTAGTGTCTGCTTGCTTTATGCCTTATTTACTATAAATATTATCCTACATGTAAGCACGTAAATGTTTCCAATCACGTGCCACAATGATGGGTAGGTAGTACTCACAGACAAGTAAAAGTCCACGGGAAAGGGTTTCTTCTTCAGGAGTTTCGGCATTCTTTACTCCGAAACTTACGGATATGTTCTTAAATTTACGCGTTTCAGATTGTACCCAACTGTAATGATGGACGTAGCTCAACAAAACATGTCAGCAGCTCCAGTATATAATCAGCATACGCTCCCCGTCCAGCAGCAGCAGCCCCAGGAAGTTACATGCCAGCAGCTTATATTTACATCACCACCCGTTCCTGCACCACAAGCTGTTAGTTCGACCACAAGAACACCATCGCCAGAAACTGTACGAGTACCGTCAATTGGTAACTTACTTACACCTATATCTCCGTTAAGTTCTGAGGAATTATCTCTACCATTAGCCAAAGCAGCAAAATATTCTCGTCATAATATGCAGTCACCATTTCTGACTTCGGCATCCAAATTATCGTCAGAAAATTCATCACAGGTGTTGCAATTGTGCTCACCATTACCTCAGTCATCGTGTTCATCATTGTCATCGTCTCCGTCAACATCGCCCGTTTCAATTATCTCTCTACCACAGCAATACACAATGTCATCATTACCCGCTATTCACTCTCAGCACGGCAGCAGCATATTCCGTCCTGTTCATTCCGTGCAGAACATTCAGAACATACAGAATATCCACACGATCACAGCCATACCGGGATTTGAAAACATGTTCAGTCTTCCAACATTGAAAGTTGAAACAGTTGATGCTGTTTTGAACTGATTTCAGGACGACGCAAACATTCACCCGTCTATCTTAGTACTACATCACATAAGCGCTTCCTATTCTGTGTAATTTAATTAACTTGCATGAAGACTATGTCGTAGGTTTTGCGATTAATTAATTACGAAGAATACATGTACCCACTGCCATTATACATGTAACACTGTATACATGTATTTGATGCTAATTTTATAATTGGTGCTTTAAATGATAATGTGTGAGTTTTGTGGCAAAAGACAAACAGGTAAAAAAATCAAATAGACCGGTAATGATACATGTACTTGATGCAAACTGAATTGCTTATGCAAATGTCAGGTGTTAGAAGGACTGCATGTATTTTGGAGTCTTGGGTTCTTTTAACAGTTTAATCCTTAAATTCATTCAACAGAATTTAAATTTTGAAAGACGGAAAAAGTTCCTTTGCAGAGCGATTCCAAGAGATTATTTTTGAAATTTTATCACTGAACTGACTGGCTCGGTTACTGAGCCAGTCATTCCAGTGGTAAATTTTCAGAGATAGTCTTCTCTTGGACTGCAAATGGACATTTCCCAAGACAACTACAGAGAACGTTTTTGACCGTGTTAAAGGGATAGAGGTTTAGGGTTAATAACTGGTTTGTGGTTTAGGGTCTGACATTATAACATGAACCGTAATAACAGCACAGCTCATAAATAAGTTAACATGTTTAGAAAACAAAAGCAGAAACACGTCAGTAAGAAATGCTCGTTTGAATATGTTGAACATAATTGAATTGGAAGACATTGCTGGACAACAATGTCTTCCAATCAAATTATGTTCAAAATATTCAACATTACATTTAATTTTGTTGCTTTTGAAACATTTTATTTCTGAACTCTGCGGTAGTGTAATAAGCCTGATCTTGTCAGACATACATATTATTTCTCATCTATCTTCTTGCGTATTAGCATTCCATAATACATACACATACAATCAAAGCATATTGTTAAAAGTAAATTTCATATTTATATTTATAAAATCAAAATTAGACTTTCCATTCTATAGTAATTTATTGAAATAAGGAAATTATTTGCAAATTCTAATTGTATATATTATTTATATAATTATCGAATCTATTATAAATACGACTTGTATTTAATTATGTATACACATGTCAGTGTACAGAGCTTGTTTAAATATAGATATTTATATGCAGTTTTCTGCATTTTATATTGATATCGAGAGAATTATTAAAAAAAATCCGTCCATTTTAAAATACG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	P53

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00870	P53	P53 DNA-binding domain	Domain	Interproscan
PF07710	P53_tetramer	P53 tetramerisation motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR002117	Family	p53 tumour suppressor family	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR010991	Domain	p53, tetramerisation domain	Interproscan
IPR011615	Domain	p53, DNA-binding domain	Interproscan
IPR012346	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR036674	Homologous_superfamily	p53-like tetramerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11447	CELLULAR TUMOR ANTIGEN P53	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0051262	Biological Process	protein tetramerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-