Gene detail

Detailed information of WZF111100 in Chaetoderma shenloong Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
WZF111100	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	chr14	7525770	7597756	-

Gene Structure

More details in Jbrowse Sequence

CDS

WZF111100.1

ATGGATGGAGATGACAGCGACAGAGCAGAATCACCACGTGCTTCTGCCCTAAGAATCTGTCGTATGGACAAATCTGGAGGATGTTGTGTCGGGAATGAAGAGGTATTCCTGCTCTGTGAGCGAGTACAAAAAGATGACATTCAGGTACGCTTCTTTGAAGTGAATGACAGTGGTGATCTGCTCTGGGAAGATTTTGGTAACTTTGGTGCTCCGGATGTTCACAGACAGTATGCAATTGTGTTCAAGACGCCTCCGTACCGTGACATACACATCCGTAACACTGTACATGTATTTATCCAGCTTCGACGGCCATCAGATCTAGAGGCCAGCGAGCCAAAGGCATTCAACTACTATCCACAAGACTTTGATAAAGAATGTATTGGTCGTAAGAGACGTAAGTTGTTGCCCGGATTTCCTCCTGGATATGGACCGGGTGATTCTAGCAATGGTGGAGGTGGAATGGGCCCACCCTACGGACCAGGGGCCAAGTTTATTGGATTTTCTGCTTCAGAGCCAGGTGAACGACACTATGGACAAGGGGAAGACAACTCACTGCAGTATAACAATCTAAGTCATCACATGCCATCATACCACTTCCATACATCATGTGTAAATGAACCACTACCAGCCCCAGTGTCTCCTTCATCCCCACTGTCCCCTACAGTGCAGGTGAAAACACAGACCCACGCATCAGCATCTGTGCATTTGAAGAATTCCGTGATACAGCTTGGTAAGCGCACCACCCTAGCGCTTCATGAATACTCCATGACTGGTGACATCCGGCCAATTCTGATGGTACAGCGTCATCTCACCAATACCACAGATGTGAACGGAGACACTCCTCTACAGATGGCAATAATTAACGGTCAGCAGGAAGTCGTCTCTCAGCTTCTCAATGTCATGAAGACGATACCTGAAGCACAGAAACGCGTGAACTCATCCAATGATCTTAGACAGACTCCACTTCACCTTGCTGTGCTGACCCAGCAACCAGAGATCATCGACCTTCTACTGAAAGCTGGTGCTGACCCCGCAATGGTGGACCATTGTGGCAATACCCCCTCTCATCTGGCTATTGAACGGTCAAGCATAGAGTGCCTGAGAGCAATGACCCGATACTTACGGCCCGGTGTGACGCAGGACAAACCATTTCCGGAACTAGATCTGCTTAACTACGATGGACTGAGCACACTACATATGGCCATGCAGTCCAGTAACTTAGAGATGGTCAAGCTACTGACCGAGCAAGGAAAAGCAGATGTGGATATGGCTGACCTGAAGAGTGGACGTACACCGCTTCATTATGCGGCAGAAGCAGCTGACCTCTCAATACTGGGATATCTTTTACTCGAGGCCTGTGTTGATGTGAACAAGCAGACATTTGACAACAATACAGCACTGCACCTGGCCACAGCTAGGAACCATATGGGCGTGGTTGCGCTGTTAATATCGGCCAATGCTGACCCAGATCTCGAGAATGACGATATGGGTGTCATAGATGATGATGTTGATGGTGAGAACAGCAGTGATGATGACAGTGATAGTGGTGATAGCATGGGTAGTCCATCAAACTATTCGGAAAGACCAGTACCATCTGGCAACCCTGGTCACATGACACAGAAGGTTTTCCGTCATTCTAATCATGTAAGGCATGGAGAGACACCAAAGGATTTGGCCAGACATTCTGAAAAGATTTTGCGTATTTTAAATGGAGAGCCATATAGCAGGGTCTGCATGACACAGGCGCCCCCCATTTTGTGCAGTGGTCTCCTGTGTAACAGCCAGGCAGGAAGTTTAGGAATTCTGCGCAGCATTGACGGGGGTTACAATAGTATCTCGGAAATATCTTACATTGATCAGCTAAGTCGTGCAAAACTGTCACACCTTCTTGATCCAGCAAAGTCAGGATCTGATTGGCAGACCCTAGCAGAAGCTCTCCACCTGGGACATATGATAGACATTTTAAAAGCTGTTCCGAGTCCCACAAAGCTTCTCTTGGACCAGTACAGGAAAAACGAGGGTACATTATCTGAGCTGAAGGAATGTTTACAGATGGTGGGATGTAATGATGCTGTGAACATTATCAATGATGTCATGCAGCAGGTGCACGAGTTGTACGCAGGCCATCTGACGTACACATCACCCACAGGTCACATGACATACACATCATCTGCAGGTCACGAGACATTCACGCCACAGACACATGACATTGGCTCCTCAACAAATTATAGCCAGAAGGACATGTGGCGTATTGACTCTGGCCTGGCTAGTATGTCCTTGTCACATGGTCACTTATCCCACTGA

Transcript

WZF111100.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00531	Death	Death domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF16179	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000451	Family	NF-kappa-B/Dorsal	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR002909	Domain	IPT domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR032397	Domain	Rel homology dimerisation domain	Interproscan
IPR033926	Domain	NFkappaB IPT domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24169	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-