Gene detail

Detailed information of Sda_chr09g02902.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02902.1	DNA2/NAM7 HELICASE FAMILY	Sda_Chr9	216980021	216988163	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g02902.1

ATGTGCTCGAAAAGCTGCTTCTCTATATCTGCTGCAACGACTGTTTTCATCAAGAATCTAGACAGTTCTGTCGACGAGGAAGCTATTTGGAACACTTTCTCATCTTTCGGGAAGATTCTAGATTGTCAGGTTACTTGGGAAGATGGTCAATCGGCGGGAACGGCCTCGATAGACTTTGAGTCAAATGAAGATGCAGAGGCGGCAGTCACTAAAGTTAATGGGATGCTGGTCAATGGACAAGAAGTGTCCATGTATAGCTGTGTTGGACCAGCACCACGTGACGTGAGAACTGACGAAGTCACCCAACTGGCGACTATTCAAGAATGGGCTGAGGATACCCTTTACGACAGTAAACATTCTAGGGCAGACCAAGGGCTACAATCAACTATATATCAAAACTTTAACACGCTATCTGATCCTACCATTCTTGTAGCATCCCCAGCAGATGCACAATGTAAGTCCACAGAGGAACCAACTGCTGGAGAACGCGCCAATCATCCAATGAGGCATGTTCCTTCAAACGGTCAAGTAACGTTGCAGAGTATATCTTCTCGGCGCGCTCCAGTAGTTAAACAGACTGGACATACTGACAATTGGGGAAGACCAAAGTGGTGGTACTCTGAATTCTACGACGAACTCTTGGATGAACCCCCAGGAGAAATATTCTGGAAACTTAATTCTCGTCTCGAGGACTTCATTTCGTCTTTGGATACCAACAGTTGGTCGCAGAGTGATATTGGCATATCTGTTACTCTAGAGTTGTTATCGAAAGCCTGTCGACATATCTCAGATACACAAACAAAGAAACGTGGACATGAAATACGTATATTAACTGCAGTTGAGCAGAGCCAATTTTTCAGGGAAAGTCTCGTGAACTTTATAATAGAAAATCACGAGGAAACCAATGAATTCCCAGATGAATGGCTTGACTTTCAGAACCAATTGTTCAATTTACTGGTTGTCATAAAAGCTATTCTGTCTGTGATTCCGTATACAGCAATCAATGTAGTTGGCGTTCTTAGTGTACTGAGCCAGATCTCCGAGTTCTGCCACGCGGAGGTAGTTTCTCTCCTGACAGAGGTGTCAGATCTGAAAGATGGCGCACTCGTTCGTTTTACGACTGTTGCGATAGATATGCCTGTGAGGAATAAGGATGGCACAGATGCTGATTTTAGACAATGTCCAGTACACCCTGTAGATGGTGATTTTGAAGTGGGACAGAAGCCAGTTCTGAGGCACAACAAAGTGAAAGGGAAATATGAAAACCTCGACCATTACTTAGATGTTCAGTTCAGACTATTGAAGGAAGATTTCCTCTTTCCACTGAGAGAAGGAATGAAAGAGTATCATGATTCAATTGACAATGGTTTGGAAGTGAAAGGAAGGTGTTTCGAAAACATACATGTGTATTACAATGTGAAGGTCATATGTCCGGTGTGCATTACTGACGGAATTGGATACAGACTTAAGTTCTCCTTAAAATCAAGGAAAATAGACTGGGCGCTGTCGAAAAGACTTATTTTCGGATCCATGATATGTCTCTCAACCAACGATTTTCAGACATTTTTCTTCGGCACGGTTGCGCAGAGTGAACCTCGTCTATTAAAGATGGGAACTGTCGACATTAAGTGTTTAGAATCGCAAAGTATTCAATACAATGAAACATATAAGATGATCGAAACTACGGCTTACTGGGAATCCTACAGGCACGTGCTGACAGGACTTCAACGAATCAGTGAAGGAGAACTACCTATGGAAGACCATTTTGTTCATTGTGAACGTTCAGTTGGTCAGCCAGCATATCTGCGTATGAATGCAAGATATGATCTTCGACCCATCTGTTATCCTGAAACATCAATTGAAGATGGAAAGAATTTGCTCAAACGGTACTTAACTCTGTTTGGTGGTATTAGTGTTTGGACCAGTAAGCCGACTGTTAACCCAACGACGTTTCCCCCTCAGCTGGAGTTTGCTAATGATGTGGACGTACATACATTGACAGAATTACCATCTTCGGACCTGTTTGGTCTCAACCAGTCGCAGCTTGGTGCATTTCAGCATGCTATGACTAAAAGCATGACGGTGATCCAAGGACCTCCTGGAACTGGAAAGACATACTTAGCTTTGAAAATTACGAAGGCCCTGCTGTGCAACACGGACGTCTGGTCCGATGATCGTACAGCACACAACAAGCCTATTCTAGTGGTGTGCTTCACCAATCATGCTCTCGACCAATTTCTCGAAGGAATTCTTAAATTCTTCACCACCGAGAGTGTTGTGAGAGTCGGAGGACGTTCACAAAGTGATGTTCTGAAAAAGTACACGCTAACAGAATGGAGAAGAAGATTTCCTTCATCTTCTTCGTTGAAAGACTCAGGAAGAACGTTATACAACTTAAAGGAACGGATCCACACCCTTTCCTTGCAGCTAATATTGGCAGACAAACAAGTGCTTCATGACACAACTCTGGCTGGTGTAATGGGACGTCATCTCACAACACTTAGGAACGATGACAGGGTTAATCGCCAACAACTTCATGTAAACCATGGCTGCTATCTATGGTTATGGTTAGGATTACGTGGTTCGGGCGATTGTGATGTTGATTTCAGGAAAGATATTTCCGCGAAATCAAAGGACGAAGAGTATGTTAGCGAAATACTATCCACCATTTACAGGAGACAACTCGATGGCGATGATGACAGTGAAACGGGAAGACATCACACCGATGTATTCGATACAAAGCTGCCTCGTTCTTACTCTTTCAGTGCACAATACAACAACCCATTCGTCCGAAAATACACGGAAAGAGATGTAGATCAGACTGTACACCCTATCCTTAATAATCGGATGACAGCAATAGAAGCATCAAAAATAATAGACGTGTGGACATTGAGTATGGACAAACGATGGAGGCTGTATTCGTATTGGGTGGAGCAATATTGTGGAAAAATACAGGAACAATTACAGCGACTAACTGGTATATACGAAGTAATGGCTGATGAAAATAGTTCCTTAAGACGTGAGAAAGATAAAGAAATCCTGAGTAATGCTTCCATCATAGGCATGACAACCACTGGGTCGGCTAGGTACCAACAGATGCTAAAACGTATTGGTCCTAACATAATTGTTGTTGAGGAGGCTGCACAAGTTCTCGAGTCCCATATCATAACAGCCGTGAATCCATCTTGTGAACATTTAATATTGATTGGTGACCACAAACAGCTGCGACCAAATCCGACAACATTCCAGTTAGCCAGAGAATACAATCTCGATATATCGCTGTTTGAGAGAATGGTTAACAATGAAGTGGATTACAAATGTCTGAAAGTACAGCATAGGATGCATCCGGATATATCTGTCCTATTGCGACACATCTATCCGGATCTACAGGACCACGACAGTGTGGCATCTTACGAAGACATCAAATGTATAGGGAAGAATGTTTTCTTCATTGACCACTATGAATTTGAGCAGAGCGATGAAGAGAATAGAAGTCACGAGAATCGTCATGAAGCGATGTTTATTACAGAGTTTGCGCTATATCTCTTGAAACAGGGGTTCAATGAGACTGATATTACAATTCTGACTGCTTATTCTGCACAAGAGCAACTGATGAGGAAACTGTTGCCTAAAGAAATAAAGAAAATAAGAATCACGACCGTCGACAATTTTCAAGGTGAAGAAAATGAGATCATTCTGCTTTCTTTCGTAAGAAGTAACCCAGAAGGGAAGACGGGGTTCCTCAAGGAAGACAACCGTATATGCGTAGCATTATCGAGGGCCAAACGTGGACTCTACATGATAGGGAACTACGAGCAATTGAGTAGCAAGAGCCCCTTGTGGAGAAAGATCGGCGATACGCTTAGAAAACATAAGTCAATTGGTTCATCATTAGAATTGGTTTGCAAGAACCATCCGGACGGGCCTAAAATTCACGTCTCAAAAGCACACGACTTCCCGCGTGAAGTTCCAGACGGCGGGTGCAAAATAGAGTGTCGTTTTCGACTAAATTGCGGCCATTACTGTCGAATGCACTGTCACCCTTTCGACAGAAACCACGAAGAATACAAATGCCATCAAACATGTGGGAAGAAATCATGTCCCCGAGGTCACATATGCAAACGTCGATGTTGTATGCCGTGCGGTGATTGTCCAGAGCCAGTAGACACTGTGATGCCTGGATGTGGCCATACTCAAAGCATCCCATGCGCACACGTCGGTCAAGATTTCTCCTGCGAGGCAGACTGTCCTCGGTCGCTCAGCTGTGGACATGTATGTGCGTTGAAATGTGGTAACCGCGAACACCGTTGTGCCAAAACTGTCGATATAGAACTTCAATGTGGCCATACTGTGGATGCTTGCATAAGTAAGATTCCAATCGATACACGGGTTTGTGACGTATGTCCTGTCAAGTAG

Transcript

Sda_chr09g02902.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0031048	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-