Gene detail

Detailed information of Sda_chr09g02830.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02830.1	DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	Sda_Chr9	212045504	212066996	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g02830.1

ATGGCTGACCCGTGTACATGGGTGACTATGTGCACGTTAAAGAACCCGGCTGTAGTGTTTGACTACTATGACAATATGGCTTTGAGGAGAGAAGAAGACAGTACATTTAAGATCCTTGTCGCTACAGATATTCATCTAGGTTATATGGAGAAAGATGCCATAAGGGGGAACGACTCTCTTAATTCATTTGAAGAAATCTTGCAGCAAGCGAAAAAGAATGAGGTTGACTTTGTCCTGTTGGGTGGAGATTTATTTCACGAAAACAAGCCGTCTAGGAGAATTATGTATGGATGCATGTCACTTCTGAGGAAATACTGCATGGGTGACAAACCACTACAATTTGAGTTCCTCAGTGACCAATCTGTTAACTTTGAGCATACAAAATTCCCTGTTCTAAACTACGAGGACCCAAATTTGAATGTATCATTTCCTGTATTCTCCATTCACGGAAACCATGATGACCCAACAGGCCAGGCTAATTTGTGTTCACTTGACCTACTCCATAGCGCTGGACTTGTTAACTATTTTGGGAAAACTTCATCACTTGAAAGAATTCAGTTGAGTCCTCTATTACTACAGAAAGGAGAATCGAAACTGGCGTTGTATGGACTGGGAACAGTCCGAGATGAGAGGTTGCATCGAATGTTCGTGAATAAAAACGTGACAATGTTACGCCCAAAAGAAGATAGGGAAGACTGGTTTAATGTGTGTGTGATTCATCAAAACCGTGCCAAACACTCAGCAACTAGCTATATTCCCGAGCAATTTCTTGATGATTTTCTTGACCTTATTTTCTGGGGTCACGAACATGAATGTCGGATAGATCCCGAGTGGAACGGTATTCAAAACTTTTATGTGACTCAACCAGGCAGCAGTGTAGCAACATCGCTAAGTGAAGGGGAGTCGGTGAAGAAACATATAGGTCTGCTTTATGTTAAGGGGAAAGATTTCAAAATGACCAAGATACCCCTGGAGACAGTTCGACAGTTTTACATGCAAGATTTAGTGCTGTCGGATTCAGGTCTGAATCCAGAAGATCCAACCATTGGGAAACAAGTTGAAGCATACTGTCAAGAAAAAGTTGAAGCAATGCTGGACAGAGCTGATGAGGAACACACAGATAACAATCGACAACCTGATAAACCACTGATTAGAATCCGTGTTGATTACAGCGGTGGATTTGAGCCTTTCAGCATGCACAGATTTGGGCAAAAGTTTGTGGACAGAATTGCCAACCCTAAAGATATCGTTCACTTTCATCGGCGCAAGGCTACTGCAGAGAAAACAGGACAAAAGAAATCAGATGATGCCTTCAATATCAAGCCACAGGCTTTGGATTCTACTGGTGTGGAAGACATGGTCAAACAATTTTTCACAAAATCTGATCAGGCATCACAGTTGCAATTACTGTCAGAGAAAGGAATAGGGGAAGCAGTGAAGGAGTTTGTTGATAAAGCTGAAAGAGAAGCCATATCTGAACTCGTTCAATACCAAAAGGATAAGACTCAGAAATATCTAAAGCAAAGAAACACTGATGAAGACAACATAGATGCTGATGTCTCACGATACAAGGAAGATCGGCAGAAAAGTAAAGAAGACGATAGAGAGATTCACGAAGTATTGCAAAGAGCAAAAGCAAAACGACCTTCCGATGATCGTGGGTTTGATGATGAAAGTGACGAAAACATGAGTAATATGGACCTGGATGATGAACTGGGAGATGGCGATGCACCTGCTCCGAGTAAGCGAGGTCGAGGACGTGGTGCAAGCAGGGGTAAGGCAGACGAGGATAAGCCTGCGAGAGGTAGAGGTGGACGAGGTAGCAGAGGCGGACGTGGTGGCAGGGGTAAGGCGCCTGTCGTAGCGGACAACCCAATCACGAATGCATTCACATCCAGCAGGATTTCACAGAGAGGAAAGAAATCCACAAATAAACGAGGAAGAGACTCGGATGATAGTGACGTGGTGGATATTTCCGATGATGACGAAGATCCATTCAATATTCAGTCATCGAGCCACCGTAAACAAACAACACCTGCAGCAAAAAGGAAACCTTCTCCCGCGAGGAAGAAAGGTGTCTTGTTTGACAGTAGCTCTGATGATGAGATTGTTCCTGTTAAGCGAAGACGCTAA

Transcript

Sda_chr09g02830.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF04152	Mre11_DNA_bind	Mre11 DNA-binding presumed domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003701	Family	DNA double-strand break repair protein Mre11	Interproscan
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR007281	Domain	Mre11, DNA-binding	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR038487	Homologous_superfamily	Mre11, capping domain	Interproscan
IPR041796	Domain	Mre11 nuclease, N-terminal metallophosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10139	DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000014	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004519	Molecular Function	endonuclease activity	Interproscan
GO:0004520	Molecular Function	DNA endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0007095	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0030870	Cellular Component	Mre11 complex	Interproscan
GO:0031573	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0035861	Cellular Component	site of double-strand break	Interproscan
GO:0042138	Biological Process	meiotic DNA double-strand break formation	Interproscan
GO:0097552	Biological Process	mitochondrial double-strand break repair via homologous recombination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-