Gene detail

Detailed information of Sda_chr09g02425.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02425.1	AMINOTRANSFERASE	Sda_Chr9	182062908	182108016	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Sda_chr09g02425.1

ATGATCGGGGAACATGTCCCGGTTGACGTTTATAGGGTCAGAAGAACGTTGGCGACAGCTAGCTCGACGAAACTAGATCCCAACGAGCCAGATGGACCAATCGTCAAGACAACTGTACCAGGTCCCGCATCTCGCAAACTCAAGGACGACCTCGATCAAATACAGAATGTCGGGTCGATCCAGTTCTTCGCCGATTACAATAAAAGCCAAGGGAATTACATAGCAGACGCAGACGGCAACATGATGCTCGATCTGTTCATGCAGATATCGTCCATTCCGATAGGCTACAACCACCCGAATTTGGTGAATGTACTTAAGAATCCCGAAGACTGGGCCACCTTCATCAACAGACCCGCATTGGGAATGTACCCTGCTGTGGACTGGGTGAATAGACTTAGGTCAGCTTTGCTATCGGTTGCTCCAGTTGGCTTGAATCAGATACAGACCATGGCCTGTGGAACATGTTCCGTCGAACACAGTTTGAAAAGTGCCTTCATGAAATACCAGAACAAAAAGAGAGGAGGTAAGCCACCTACAGCCGAGGAGATGGAGTCGTGTGTGAAGAATCAGCCACCTGGAAGTCCAGATTTATCGATCCTGTCTTTCCAAGGGGGCTTCCACGGCAGAACAATGGCCTCAATGACATTGTCACACTCTAAATGGCTGCACCGGTTGGATTTCCCGTGCCCTGATTGGCCAATCGCGTCTTTCCCAGAACTGAAGTACCCTCTTGAAGAATTCCAAAGAGAAAATGATGCCGAAGAGGAACGTTGCCTCGCCACGGTTGAGGAACGAATACACCAGTACCAGAAAATCTTGAACCCTGTTGTCGGCTGTGTCATCGAACCAGTTCAATCAGAAGGAGGAGACAGATTCGCCAGTCCAAAATTCTTCCAAAAACTTCAACAGATAACTAAAAAGAACGACATCACGCTTATAGTTGATGAGGTACAGACAGGATGCGGGGCGACAGGTAAATTCTGGGCGCATGAACACTTCAACCTTCCAGAATCCCCAGACATGGTCGTCTTCAGCAAGAAAATGCTAACAGGAGGTTTCTTTCACCGAGAGGAAACGAGGCCCCAGGAAGGTGGAAGGATATTCAACACATGGGTGGGTGATCCCACAAAGGTGATGTTCCTGGAGGCTGTCGTGAAGACAATCAAACAGGATAATCTGTTGTCGTTGGTTCAAGACACGGGGGGTTATCTCATGAGCGGCCTGAAAGATGCCCAGAGCCAGTATTCAGGACTGATATCAAACGCTAGAGGTATCGGCAGCTTCGGCTCCATCGATTTCAAGGACGGGGCCACAAGGGATAAAGTGATACAAAATATGAAGAACAAAGGTATTAACCTGGGAGCATGTAGTGATGTCTCAGTGCGATTCCGACCATCGCTTACCCTGCAGCGACACCATGTGGATGTATTCTTTGATCGATTCTACTCTGTGCTGAAGGAGTTTTAGGAGAGTCAACTGTCAGAGATGATAGCAAAGAATGAAAAGCATTCCATACAATCAGAATTATGCATCAAATGAGATGCTGTAGAATCAACTGCTTACCGTACTACTCCACGCGCCTTCACAATCACAACACATGTTTATTATTTATTAAAATAGTGAAAAAATGTGATAAAATCCAATCCAATGCTTTTATGCAAGTTTATGTCAATCGAAATTAATGACTAGTGGATATAACCAGCCATGGTCTGATAGATGTGTAAAAATTGAAGCAGGATGCAGTCTTGTAGAAAGCTTGTTTATCCGTTGATATTGTTTACTGTCAAGCTGCTCTAAAATTGTATACATGTAGGTTATGGTATTTACGGTTCCAGACACATGTACAGCTGCAACATATATTTTTAGCATCATGATTGGCTTTCCCAATGAAAAAAAATATGAATGAAATCCGATGTTAGTTAAAGTTATCGCGCAAATTACGGCCTTAAAATTTCCAAAAAATAGACAAATTAATAGTCTTAACTCAAAAATAATTGAACCAACCTGGTTTTCATACAATCGAGATATTGTTGTAAGAGATCCATATACCAAATTGTTCATTGTAAGTTGCGTGCTAACATTTTTAAAATTGCAAATAGGCAAAGGGCCATAACTCTGGCAAAAATGCTTTCATGGGCCCGATTTTCTCTGCGAAGCTGTCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004631	Family	4-aminobutyrate aminotransferase, eukaryotic	Interproscan
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR049704	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43206	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003867	Molecular Function	obsolete 4-aminobutyrate transaminase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009448	Biological Process	gamma-aminobutyric acid metabolic process	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-