Gene detail

Detailed information of Sda_chr09g02294.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02294.1	-	Sda_Chr9	173461032	173464664	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g02294.1

ATGAACATTGAAAGTAAAAGCCGAAGCAAAATCATCAAAATGAAGAAATTTATGCAGCGCAAAGCTTACGACATTATATCACATAAACATGGCATAGCGATATCATTATTAACTTTTGGACTAATTGTTATGACTTCATTTTATTTTGGAGAAACAGTTGTTGAATGGAGCACTGAGAAATATGCAGCCGTTTTCAACTCGTTCAGTGACAATATAGGGGGCAGGTCGTTTAGGGAAAAGCTCTGTTCACCTTTGCCTATTGACGTTGTATACACATGGGTAAATGGCAGTGATCCCAAGATGTTCAATCAGTTGCGATTAGTCCGAGCTGGAATGGAGGTGGAACTGAACGAATCTCATGTTGCCCATGCAAAGGAATGTGTTTTTTCAAACTGTTTTCCAACAAATATGATAGTGCTGGACAAGCCATCAGTGGCATCACTGAATATGACAGCAAAAAATATTTTGAGCAGCCCTTTTCTTCAGATTGAACATTGTTCAAAATCGATAGATGTCGTAGAAAATTACACGATGATAACGTTTAGGAACATCTCATGTGTTGACAATATATTGAATAAAACGAAAGAGTTATCAATAAGAGGTCATAAGTTTGTGATAAAACAAGTATATATCACAACTGACGGAACTGTCGTGAAAAGTATGAAGTCAGAGAAGTCTCTTGTTATGTCTGGATTCCCTGGATCATTTTCTCAGGATCAGCTCAAGTCCAGCTTGCCATCTAAATTTAAAAACATCAGAAGCATTGAGTTATTTGAAGATAAAGGTCTAGCTTTAATACATCTAACTGACAGAAATGAGTTGGCAGAACTGCTCAAAGATAATTTCACAATTGAAAGCAAACAACCAACACTGAGTCAGGCATATTATGTTTGGGACCTCAGAGACTTATCCAGAAATGACGACATTTCCGCAAGCAGATTTGAGGACAATGAGGAACTCCGATATTCGTTGCGATCTGTTGAACAATTTGCTCCATGGGTTCGACACATTTACATTGTAACTAATGGACAAATTCCTCATTGGTTGAACATTGATACTCCTAGACTTACTATAATTACACATGAAGAAATATTTCCAAACAAATCACACTTACCAACATTTTCTTCCCCATCCATCGAGTCTCATATACATCGTATTCCAGGGTTGTCAGACAAATTCATATACATGAATGATGATGTTATATTTGGAAGAGAAGTTTGGCCTGAAGATTTCTTCACTGATTCGCAAGGTCAAAAAGTCTACCTGACATGGTCAATTCCAAATTGCCACGAGGGATGTCCAACCACCTGGATTAAAGATAGTTATTGCGACAAGGCCTGTAACAATACTGAATGTGAATGGGATGGGGGTGATTGCTCGGGAGATAAAGCAAGTATCCAACCTGGGGCTGGATGGGACGGAGGGTTTCATGGTTTCGATTCCAATGAACCAAACAAGCTATATTGTCATTCTGGGTGCAGTAATTCATGGTTAGCTGATAAATATTGTGATGCTGCATGTAACGTAGAATCCTGTGCTTTTGATATTGGAGATTGTGGGACGGGGAACTATGATAAACTACATAAGTTGGACCTCACACAGAATATGACAGAATATTCTCTACCCAAAGGTGTTGACAAGTTTTACTTCAATCTCATTCCAGTTTACTCTTCGAACGGAACAATTACCAAAGCAATTTATGAAGGAAATGACATTATTCGAGCTACTGCAGTTGCTCAAAATAACCATGTGATGACTGTAATCCTCTTTGCTGGTCATAACTCTACAAAACTGGAGTTCAGACTGCAAGGCCATAGGCATAAGGGTGATGAAAAAATTGAGCTACATTTTAATTTCACAGTTTCAGTCGACACTTCAGTAACTGCGATATCAAAAACTATAATAAAATCAAATGAAACAAATTCAAATATTTCACACATTAATGAAACGGAAAAGACTATACCATTCAAATTTGAGGAGATTCCAGCTAACCAAAAGTTGCCACAGGCAATCTCCGTGGATCCAGTCAATTCATATATTCTTCCCAAAAACTTTACGTCCACTAATTATATATCACTGTTCAATATGGAACTACGAAGTCTTTCAGATTTGTTGAGTGAAGGATTCTTAACAATTTCTGGATTTGAGAAGAAGCGGAAGTCTCTTATTAGTACAATTAAAAAGAATTCATTGAAATTTGATGAACGAAAAATCATAAAAATTCAAAGCAATAACTCATTTTATTATGAATATGTGATCAATGACACCTCTTCAATCGGAGATGGGATAAAACAAGCGCAGGATCATGTTGGACGTAAACTGCTATCTCTCATAGACAGCAATCATCCAATGATGAAATCTGGTGAAAATGTTGATGTCATAGACTTCCATGATGGTGAGAGGTTGATGATGCCAAATATTGTCAAAGATGAAATACCAGTAATTATAAATACTCATAATGTGGATAGTATTCAACCTTGGGAGAAGACTTATGAAGTAGCTCAAGTGAGAAAGTTACAAGATCGTATTATGAGAGTGAACAGATATACAGACGTTCAATATAAAGTCAGAAGAACGCTTGACACATTTGGTGAGTCATTGAAGCATGTGAACAAACTCTACAACAAAGCTTTTGGTTATGCTGCTCGCAAAGTTCCTGGTCACATGCCTCATATGATTGACAAACATGTGATGAATGAACTACAATCGCGGTTTCCTGAAGAGTGGAAAACTACGTCATCGCACAAAGTGAGAAGTCCTGATGATATGCAATATTCATTCTCTTATTTCTATTACTTGATGGGAGTGACGCAGGAAACAACCATCGAGAATGTGTTTGATGCTATGGATACCGATAATTCCAAAGTTCTGTCTGACAGGGAGATACGAACCCTAGCGACAAAGATATACGAACTTCCGCTTGACCTACCGTCTTTAGTTCGGTTAGAAGCAACTCTCGTGAATTGTTCCAAACAGCAAAATGAAACAACAGAAGTTATAAGTTCTCCACCTGAAATATATTATGACAAATCAATGCCTCAGATCACCAGAAATTTGTTTGTAACTTGTCCAGAGATGAAAGATATTCTTAAGGACAAGTTTAAAGCTATAAGCAAGTACAAGCATGTTACAATGGATGATTCTGATATTTCTTTCAAAATGATAAAAGGGAACACTTCTGATGTGGTGGGCCAACTTGATGACGTCAGAAAAAATCCCAAAAAGTTTATATGCCTGAATGACAATATTGAACATAAAAATGATGAACGAACTCGCACAGTGAAAGCAATACTTCAGGACTTTTATGAAGCTCATTTTCCAACAACTTCACAGTTTGAGCTTAACAGAGAATATCGAAACCGGTTTCTTTATGTTAGTGATTTAAATGAGTGGAAATATTACAGAGATTGGCTTAAATTCTGGACTCATATTGCATTGGCTATTTTAGTTTTATTCACAATTGTATCATTCTTCAGTGAAAAAATAGAAGCTATGCAAAGGCGATATAAACGCTATATGCGGAGTACTGTAAAAAGATCCAATACTTCGGACAATGGGTCCGATTCTTCCAGCGCAACAACTGACTCCGACGATTCTTCATTAAAGGGACCTAGTTCTATTATAACATTATGA

Transcript

Sda_chr09g02294.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00066	Notch	LNR domain	Domain	Interproscan
PF11380	Stealth_CR2	Stealth protein CR2, conserved region 2	Family	Interproscan
PF17101	Stealth_CR1	Stealth protein CR1, conserved region 1	Family	Interproscan
PF17102	Stealth_CR3	Stealth protein CR3, conserved region 3	Family	Interproscan
PF17103	Stealth_CR4	Stealth protein CR4, conserved region 4	Family	Interproscan
PF18440	GlcNAc-1_reg	Putative GlcNAc-1 phosphotransferase regulatory domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000800	Domain	Notch domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR021520	Domain	Stealth protein CR2, conserved region 2	Interproscan
IPR031356	Domain	Stealth protein CR4, conserved region 4	Interproscan
IPR031357	Domain	Stealth protein CR3, conserved region 3	Interproscan
IPR031358	Domain	Stealth protein CR1, conserved region 1	Interproscan
IPR035993	Homologous_superfamily	Notch-like domain superfamily	Interproscan
IPR041536	Domain	N-acetylglucosamine-1-phosphotransferase subunit alpha/beta, regulatory domain	Interproscan
IPR047141	Family	Stealth family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24045	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003976	Molecular Function	UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0016256	Biological Process	N-glycan processing to lysosome	Interproscan
GO:0016772	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0046835	Biological Process	carbohydrate phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-