Gene detail

Detailed information of Sda_chr09g02290.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02290.1	ANKYRIN DOMAIN-CONTAINING	Sda_Chr9	172445104	172537725	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g02290.1

AAAGGGAACACTGCTCTGCACATCGCATCATTGGCGGGACATCTGGACATCGTAAAACTATTGTTAAACACTGGTGCTAAGGTCAACGTGCAATCTCAAACTGGATTTACACCTTTGTATATGGGAGCCCAGGAGGGCCATGCTGAAGTGGTGAAGCATCTTTTAGCTACTGGAGCCAGTCAGAGTTTGGCCACCGGGGACGGATTTACTCCCCTTGCTGTTGCTCTTCAACAAGAGCGACACAAAGTTGTCAGTGTACTTCTGGAGCATGACACAAAGGGCAAAGTTCGTCTTCCTGCTCTACATATTGCCGCTAAAAAGGATGATGTTAAATCAGCGGCACTGCTCCTTCAAAATGAACAAAATAGTGTGGATTCTGAAACCAAGAGTGGATTTACACCTCTCCACATCGCCTCTCATTATGGAAATGTCAATGTCGCCACACTGCTTATACAGAGAGGAGCTGATGTCAACTTCAAAGCAAAGAACAACATTACACCTTTGCATGTGGCTTCAAGATGGGGAAAAGCCAACATGATCACCCTCTTATTGGACAGCAATGCCCATATCGATGATAGAACCAGGGATGGATTAACACCTTTGCATTGCGCCGCCAGAAGTGGACATGAGAATGTCGTGGATATTTTACTGGAACGTGGTGCACCATACTCTGCTAAAACCAAGAATGGACTGACGCCTATCCACATGGCCGCCCAAGGAGATCATGTGGACTGTGCACGTCTGCTACTCTACCACAAAGCACCTGTCGATGATGTCACTGTGGACTATTTGACACCTCTCCATGTAGCAGCCCACTGTGGTAATGTCAAAACAGCCAAGTTACTACTGGACAGAAAATGTGATCCCAACTCCCGAGCATTGAATGGGTTCACCCCACTGCACATTGCTTGTAAGAAAAACCGAATAAAGGTCGTGGAATTGTTGCTGAAATACGGAGCTTCTATCGAAGCCACAACTGAGTCTGGATTAACACCACTGCATGTTGCTTCATTCATGGGACACATGAATATCGTGTATCACCTGATTCGTAACAACGCTAACCCGGATTATCCGACTGTGAGAGGAGAGACCGCACTACATTTAGCAGCCCGAGCGAATCAAACCGACATCATTCGTATTTTGCTCAGAAACGGAGCCAGTGTCGACGCTAAAGCAAGGGAACAACAAACCCCCTTGCACATAGCAGCCCGACTGGGAAATGTTGACAATGTAGTCCTGTTCTTACAACACGGTGCTGATGCGAACGCTGTCACCAAGGATTTATACACTCCTCTGCACATCGCTGCGAAGGAGGGACACGAAGAGGTGGCCGCAGTGTTACTGGAACACATGGCTTCTCATAGCCTCACAACAAAGAAGGGATTCACTCCTCTCCACATAGCAGCTAAATATGGTAACATCAAGGTCGCGAGACTACTGCTGCAGAAAGAAGCCAATCCAGACGTACAAGGAAAGAATGGATTAACTCCCCTGCATGTCGCTACTCACTACAACCACGTCAATGTCGCCTTGCTTCTGCTCGACCACAAGGCATCACCCCATTCTGCTGCTAAGAATGGTTACACTCCCCTGCACATTGCCGCCAAGAAAAACCAGATGGACATCGCCACCACACTGTTGGAGTACAGTGCTGACCCAAATGCTGAATCTAAGAATGGTTTCACGCCTTTACATTTGGCTGCCCAGGAAGGACACACAGATATGGTATCTTTATTACTCGAACACAAAGGCAACGTCACTGCCAGAGCAAACAATGGATTATGTCCCCTGCATTTAGCTGCCCAAGAGGACAGAGTTCCAGTTGCTGAAGTTTTAGTGAAAGCTGATGTTGTTATAGATCCACAGACTAAGGCTGGATATACACCCTTGCACACGGCTTGCCATTTCGGACAGATTAATATGGTGCGATTCCTGTTGGACAGAGAGGCGTCTGTCAGCTCTACAACTAAGTTGGGTTACACGCCTCTCCATCAGGCATCACAACAAGGCCATGTTATGGTCGTCAACCTATTGCTGAAGAACAAGGCTTCACCTAACGCTGTGACTAATCAAGGGCAAACTGCTCTTTCAATTGCTCAGCGTCTGGGCTACATCTCTGTAGTCGAAGCATTGAAGGGCGTAACAGAGGTGACAGAAACCGTGCCATCTACGGAGGACAAATACAAGGTGGTATCACCAGAGGTCATGCAAGAGACGATGCTATCTGACTCGGAGGACGAAGGAGGGGATGACTTCATGCCCCAGTCACCTCTGTTCGGGAAGCCTTTATCGGAACAACATGTCTACTTACCCTATGTTGAGGGCAAACAACTCCGTGAAGACAGCATTTCACTGGAGAGAACTAGCATTTTGTCACCACTGGACAACTCTTACGATAAGGAAGCAAATAATAAAACGCGTGTTACTGAGGATCCACGCCTGAGGAATCGCAGTGAAATCGGCACTGCTCTGCGATACCCATCCTATTTGGAGCGTGGACCAGATTATGAAGCCGAAATGAGATACTTTCAGGGAGACACCCTCTCACCAAGAGATCTAAAGGAGGGAAAATCTAGATTGGACAGTGTGTTTGAAGACACAGGGCCATCGGCCAACTCTTCAATGGAGGTAGATCCAAATAAATCTCTCGAGGCCCCTCGGTCTCTTGAGGAAAGCATCAACGAACTGGAATATGATGATGAATTCAAGTATCTAGTGGATGATTCGGCAATTAAAAAGAAAGATGACATGTTTGGTGAAGACTTGTATGGGCGTGGCTCATTACGATACGGCAGAAGCGGCGCTCCCATTTACCGGGATTCGTATCCAAGCCTGGGCTCAGTGTCGACTCCACCTAAATCTGGATCATTTGAACAGCCCATGAGCTTTGCGTCATCTACTCCATTATATCAGGGCAAACTCACTGCGAGTACTGACACGGGGATTGTACCCCAGGAAGATATACCTGATGATTCTCCTTTAGTCCGAGAGGACTTTATGGAGGCCCAGATAGTAGGGACCACCTATTCCGCGCCACCGCCTTCTGACAAGCGGTATAATGCCAACCTTCCCACGGGAGATAACACCAGGTTCAGCTCATACAGTGGATCCTCGTTCAACACCAGCTTCGACCCTGACAATGTTTCTGTTGACAAGAGCCCTGTCTACACTGGCTTCCTGATCAGTTTTATGGTCGACGCCCGAGGCGGTGCCATGCGAGGATGTCGTCACTCTGGCGTCAGAATCATCATCCCGCCGAGGAAGGCCTCCATGCCGACAAGAGTTACATGCCGACTTGTCAAGAAGGAGAAACTACTCCACCCACCTCCGATGAACGAGGGCGAGGCTCTCGCCACCAGAATCTTGGAAATGGGACCTGTTGCCACCAAGTTCCTTGGGTAA

Transcript

Sda_chr09g02290.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00791	ZU5	ZU5 domain	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000906	Domain	ZU5 domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052391	Family	E3 Ligase Complex Components and Neurotoxins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24133	ANKYRIN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008093	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0030507	Molecular Function	spectrin binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-