Gene detail

Detailed information of Sda_chr09g02049.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g02049.1	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Sda_Chr9	154483951	154516783	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g02049.1

ATGGACAGCCTTAGCACAAGTATAAAGACAGTGGCTGGAAAGACTACCAGTCAGTTGACTGCAGGAGGAAAGTGGGACGGACGCCCAGACGACAGTGGCTGGAATCAGGGGCCACCTGTCAAGCCTGGCAGTAGTGGTTGGGGCGATTCCAACGTACAGGCAGCTAATAGAATGAACATGTTGGACTTTGACCATTTCCAGAGTTCCAACCAGAGAAGTGTTTCTGGAATGGGGGCTCCCGATGCCTCAGTGGGATGGCGAGGCCTCGGAGGGAAGCCTAATGGAAATGGTATTGTTGTGGATTCCACTGACAAGGAAGCCTGGCCTTCCATAAATAATGACAACTCCGAAACTGCTTCTGAAGCAGATGACAATGTTTCCGTCAAGTCAGGATCTGTGATATCTAGCTCAAGCAACCCAAGTCAAGGCCACGAGGCAAATCAAACTACAAGTGCCATTCAAAGTCAAGGTGCTTCTGATATTTGGAGTGCCAGTTCCACCCAAAATGGAATTGATGCGACTTGGGGCATGAGTAGTGCTCCAAACTCTACTGCTGCGACTATGAACTCATTGGGTTGGGGCAATACGCCTACTAGTCTTTCTATGACCAATCGTGGACATAATATGCAAAATGACGCCAGTTCCGCTGGCAGTGATAATTTATCAAATTCCAATTTCCCATCCAAATCAGGATGGACTTCAACTGCCTCTAATAGGCCACAAAACTATGTGCAACCTGGTGCAGGGAATACCGTTGGATTTTCTGGTGCTCAAAACACTGGTCCTAACTTGGCGTCCAGTCAAGCAGGGCCGAACAATAATCAAATGTGGCCTGGTCAGGGTAACGCCAGCTCCCTGTTGCCAAAGTCTGTTGAGTCAGCTTGGAATAATTCTAGTTCAACCAGTTTCAGTAACACTGTGAGTGTTATCGGTGATGCATCAAATGCTAATAAGGGTGGTGGCAATACCTCAGGGAGCGTGACCAATCAGTCGCCCGGCTGGGGACCAGTTGGACCGAATACTTCAAGTGCAAGTGCTAATTCCTCAGGATGGAGCAATACTGCTCCCTCAGGTGCAAGTGAATGGGGCGCTTCAGCGGATGGCAAAACTCAGTCACAATGGGACAGTGCAAATTCGCAAAGCCAATGGGGAGATGAAGCTTCAAATCAAACCAATTCCAATGTTCCAAAGTCTCAGGCGCCGCCAAGTACTTGGGCTCAAGCGGCAGGGAAAGGTCTGCCGCCTACCCCAAGTAATCCTGACAACCCCAAGGCTTCTGCTGCAGCAGCTCAGGCTTTTAAAGCTCAGTCCGAGTCAGATAAGCTTCGTAGTGTGATCGACAACCCAACAGGATGGGGCACACGACCTGTTAGACAAGATACTCAATGGGAATTGAGCCAGTCTCCAAATAGTAAACGCAAGTTTTCTGCTGAACCAAAAGAGGTGGTTCCGTCAAATGTTTGGAATAATAATAACGGTACAGCAATTTGGGAGGCTGCAGTTCAAGAACAGCAGCAGGCACAGCTTGCTGCGAGAAACACTGCCGCTGCGAACAACGCTGCGAACAACGCTGCGAACAACGCTGCGAACAATGCTGCGAACAATGCTGCGAACAATTTTGCTTGGACAAATTCTGGTGCTTCGGGCATGCCAAACATGGACCATAATCCACAACAGTGGCCCGGTTCAAAAGAGGAAAACCCTAACTGGAAAGCTGAAATAGAAAATCAGGCTAACACGATTGGTACATGGGGTCCAAGTGGTGGTACCAATGAAAATGGCGACATGTGGGGTGGAAAGACAGAGACTGGTTCGTGGGGTGAAAATGATCCCAACGCACAGTGGAACGGTGGTAGACCGGATTATAATAGGCGTCCAGATCCTTCGGGCAACTGGGGAGAAATGAATCAAAAGCCTCCACAAATGTCACAGCAAATGCCTCCACAAATGCCTCCGCAAGGGTGGAACCCTTCTGAGAAGAACATGCAGCCACCAGGATGGGGTGCTGCCGAACCACAAATGATGAAACAACAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAACATCAACCACCACCACCACCCGGGGCCATGCAGCCGCCTCCACCGTGTCCACCCACTTCCGAAGCTGAATGGAACAAAACACAACAGGCTCGCCCCCCGGGCCCCAATCCCAATGGATGGGGAGATCCAGGACCAATGAACCGTGTAAATGATGATGGCACCAGTATCTGGGCAGCCAATGCCCAACAGCAGGCCCAAGCAGCCGGTTGGGGTGATACAGCAAATAATGCTAGTTGGAACCCTATTGCACGTCCAAAGCAGCCCAATTCAAATTGGCAAGACAATAACGAAGCCAACTGGAATGCTCAGAATGCAAAGAAAGCAGATTCATGGATTGAGTCTCAGAGAAATTGGAATGATGCTGACATGGGCAACTGGAGTGACATGCAAGAGTTTAATTGCTCGTGGACAAGCGCTTCAAGCGCACGCGGCAGGAAGATACTCAATCAGTTTAAGGTATCGCGAGACAAGAAAACTGGCCCAAATCAATTACCACAACGAAGCAAGCTTCTTCAACAGCTCATCGATATGGGATTTAAGAAAGATGATGCCCAAGCTGCTCTCATAACCAACAATATGAATTTTGAAAGTGCACTTGCTGATCTTGTTCAAGGTGCTAAAAAAGAATCTGATTCGGACGTATTCAGCAGTGTGCCGAGGAAGCTGACAGGCTCAGGGATGGCACCTGCCAACTCTCTGTCAAACGATGACATATCAGATACTCAGAATGACAACTCACTTGTGCCTACCAACAATTCCATGCAAAATACTCCATTTCAAAATGCTCAAGTACCAAATCCAGCTATAGCCAATCTGAAGCAAGGTGGTACTAGTCTGCCTCACTCTAGTCTTACTCCTAACCCCAGTATTAATATGATGCAACAGAAGAATCTTCAGCAGAAGCTGCTACAAGTTCAGCCAATGAATAACTTTACTCCTCCGCCAGGTCAACCTCTCACTGGGCGCAACCAGCTCACAAACCAGGTGGCGCATCAACAAGCGACTCAGCAGATTCATCAGCAACTCAAAATGGCTGTCAACACTGGTCTTATTGACCCCCAATTATTGACACACCCTCTCCCACCTCCGATGCTCATCCTTATCCAGCAGTTATTGCAACAACAGCAAGTGCTGCAACAGTTGGTTGCCAAGCAACAGCAGCTGCAGCAGCAACAAGAAAGAGGGGGTCAGTATCAGCTCTCACAGTTGGTTATAATAATGAATTCAGCTCGTCAACAAATCCTACAGCAGCAACAGAAGATTGCTCAGGCCCAGCAGCAACTGTTGAAGCCACAGACAAGTTCTTCAACTGAGTCGCCCCCGGCAACGACCACAAGCAGTAATAATGATCCAATAGGACCAATACCAGAGATGAATAACATGAATATAGCAACTTCTCAGCCTGGGCCACAGACACAGTCCCGTCTGAAACAATGGAAGACGCCGTCATCTGTAAGTAGCGACTCTTCTGATGCAGGCGAAAGTTCTCTGAACAAAGCTGTTGGAAGTAAACCGATTCACCAATCGCAGTCGACCCCAAACCTTGGTTCTGCAATGAGTCTCAACTTGAGCGGCGATACCACTTGGTCAAATGCTGCAAGTTCAAATTTAGCTAACTGGCCGACAAAAAGCAATAAGGGATCTCCAGTTGGTGATGCAAAAGAGTCCACAGGGGAAATCAAAGCTACTTCACCAACTGATTTGACTCCGGTGTCAACTGCCCCAACGACAGCAATTGCGACACCAAACTCGGCTGCAAATGATGCTGAAAACAACGATTCAGTCATAGAGTTCGTTCCCGGCCAGCCTTGGGGTGGAATCCAAAAGCTTTCAAAGAACCCAGAGGATGATCCTCATATTACGCCAGGAAGCTGCGCCCGTCAACTTAGCGTCAACACAATCAAAGATGAATATTTGAACAACCTGACAAGCCAGGCCAAGTCTAGCCCGAGTACTGATACTTCCCAGTTCAACACGGCCAACTCAATTGTCAATTCACTGACACCTGGTCTCCACAAGTCATGGCCAAATGAGTCTGTCGCCCCGACAAGCTTTACCTCTCAGATCTGGAACGTGCCACTACCGAAGAACAATCTTGATATTCGTCCTCCATCACAGGGTATGGCTGGAAGATCAACGATGCGCCAACAATCTTGGGCTGGCCGTTCATCTGGTTCTGCATTCCAACAGACTGGTTTGGACAGAAACTTCACTCCATCCGTATGGTTAACTCTCAGAAATTTGACGCCTCAGATTGATGCTTCCACACTGAAAACATTATGCCAGCAGCATGGCCCACTGCAGATGTTCTTAATGAATCTGAATCAGGGATTCGCCTTGGTGTGCTATTCATCGACAGAAGAATCACTGAAGGCACAGAAGGCCCTCAATACTTGCGTCCTTGGCAACACAACCATTTTGGCTGATTTTGTGCCGGAAGCAGATGTCCGCCGAATATACGAGCAGCAAGGTAGCTCACTGTCTGCCGCTGGCCCACAGTCTCAAGCAAGCATATCGCGCAACAGTTCCAGCCAATGGAGCGGCAGCTCATCTACAGGATCGACGACATACTCAATCGGCGGAAGTTACCAGAATTCAGGTAACAGCGGCAACAGCATGTGGAACAGCGACCCTTGGGGGTCTGGTCAGAATGACGACCACAATGCAACTCCTCTCCTTAGCTCGATTCTCGGCAAGGATTCCATGTGA

Transcript

Sda_chr09g02049.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12938	M_domain	M domain of GW182	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR026805	Domain	GW182, middle domain	Interproscan
IPR033503	Domain	Gawky, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052068	Family	GW182 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0035195	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035278	Biological Process	miRNA-mediated gene silencing by inhibition of translation	Interproscan
GO:0060213	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-