Gene detail

Detailed information of Sda_chr09g00985.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr09g00985.1	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Sda_Chr9	72175039	72179432	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr09g00985.1

ATGGACATCGATTTAAAAATTAGCGACGCCATTAAATCATCGCAGTCGGATCTTTTGGGTCAACTTAGCGTATTAATAGATAAAAAGCTAACAAAATGCGTTAGCGCCGACGCTGAGAAACCGGGAGCAGACAAATTCAAATTTAAGAGGCAAAGTAATGAAGAACAGCACACCTCGAACCAAAAAGTGATCGACAAACTTCGGAACGCCCAGATATACCTGGACGGCAATGAAGATTCCGGAGTGGAAGCCGCGAGCCAATCCTTAAAAGAAGGTATAGACATGTTACAACACCGGCAAAAACTGATAAAGCTTGCCGATTCATCACAGTTAGGATGGAAAGTTGTAGCTGAATATGAATGCCACCAGCTAGCGTCGGATTCAGACGATGAAAAGAGAATATACAAAGCTGAAGCTAGAGCTCAGAGGAAGATGACGCGAGAAAAGACAACCAAAAATCGCCGTTTTAATCCAATCAAGAGGGATTCGGCAGTTCGGATTCAGGGGACGGATCGACAGAGTTCCAGAGCTAATTCCAGGAAGCCCGGGCTGTGTTTCCTCTGTGGGCTACCAGGTCATTGGAAAGATGAATGCGACAGGAGAGGAACGGCGCCAAGAAATACGGCTGCCAATAAGATAAGTATTTTAGAAAATACTTTAGATTCACAACGGTTGAAGACCGTTGGGGTTATGCGCGATCAAAGCGCGAACGATGCGAACAAGCCGCATAAGTCGGTAGCGTCAGGCGAAACGAGTAATCGTAATTTGTCGAGCGTTGCTTATAGTTTGGGGAGCAAATATAACCGCGCGAATTATTCGGTCGCGGAGTACAAAGCGGCGAAATATACGGCCGTTACAAAAAACGCGGGCGTTTGCTTATCAGAAACAAATAAAAGTGTTCACGGCAATGATAGCCGCAAAGCCGTCGCTAGCGCAATGAACAGAGAGAGCGCCGGGGCTAACAGCGCAGTTGAAAAGTTTGTTTACACTCGAGTCAGTGACGCGGAAAGTCACAGTAAAGTCGCAGAAGTAGACTTAGTAGTTTCTGTCGAGTCGATTGATAATACTGCATGTTTAACAGAGCTGGAAAGGTTCGCTTCAGATAACGCGGGCGTTTGTTTATTAGAGACAAATAAAAGTGTTCACGGCAATGATAGCCGCAAAGCCGTCGCTAGCGTAATGAACAGCGAGCGCGCCGGGGCTGACAGCGCAGTTGAAAAGTTTGTTTACACTCGAGTCAGTGACGCGGAAAGTCACAGTAAAGTCGCAGAAGTAGACTTAGTAGTTTCTGTCGAGTCGATTGATAATACTACATGTTTAACAGAGCTGGAAAAGTTCGCTTCGGATAGCGCGTTCGATACAGCCTGTTTAGTTGGCACGGGAGATAATCCGGGTAATCGCGCGGAGATACCCAGACACCGAATTGAGTGTCATGATTCGGTCAGTCCGCGAGGTAGATTGAATGAAAATTATTCAAAGTGGAAGACAGCGGGCGCTTCAGATTATTTGTTGGGAATAGTGGAACACGGGTATAAGTTGCCATTTTTAACGGTTCCAACGGAGTGTTGTCTGAGAAATAACAAATCGGCACGGGACAATTCAGAGTTTGTAAGAACGGAAATAGAAAAATTATTGGAATTAAATTGCATTTCTCAAGTAAATGATAAGCCGGTCGTAGTTAACCCGCTTACCGTGGCAACGAATAGGGAAGGCAAACAACGTATGGTACTTGACTGTCGACATATAAATCACTCTTTGGCCAGTTTCAAATTTACTCTGGAAAACGGCTCGGTTGCCAGAGAAATGTTCTCAATGGGCGATTATATGTTCACTTTTGATCTTCGAAGTGCATATCATTCAGTCGAAATATTTCATTCCTTCAGAACTTATCTAGGTTTCTCCTGGCTATTAAACGGGCGAGAAACTTTCTTTGTATACAATGTTTTACCATTTGGAATTTCGACAGCGGCGTTTATATATACCAAATTGACAAGATTTGTCACCAAATTGTGGCGTTCAGAGGGGCACAAGGTAATAATGTACCTAGATGACGGAATCGCAGGTGCTCAAAGTATTCAAGCGGCAGCTTCTTTGAGCGAGAAAGTCGAGCAAGATTTGATAGATTTCGGATTTTTGATTTCATACAAAAAATGCACTTGGTTTCCGAAAACGAGCGCCAGATGGTTGGGTTTGGATTGGGACACGGTACACGGGCGAGTATCCGTTTCAGATATTCGGATTCAGAGATTGATACAAGCTATTAAACGAGTGGAGGAGCAAACGCAAAGGCGCGACGGTTTTGTGCAAGCGCGCGCGTTAGCCGCCGTAGTCGGCCAACTGATATCAATGAACGGTGCCGTGGAATCGGTGGTTAGACTGAAAAGTCGCTATATGTACAACGCGTTGGCGTATAAAGCGAGTTGGGACTCGCCGGTACCCGTTTGCGCGGAAGCGGCAAACGAGTTGAGGTTTTGGAAAGACAATATTCAGTCAATGAACGGTCAGGACTTGGTCAGTCCAGGTGGTTACACCACGGAGGTGTTTACCGATGCCTCCAGTACTGGTTATGGCGGTTTCGTCCCGGATATGGACGAGTCGGAAGTGATTGGTTCGTGGTCACTGGAAGAGCGCAACTCGAGTTCCACTTGGCGTGAGCTAGAGGCTATGAATCGAGTATGCAGGTCTGTCAGTCGGAAACTGGCGGGTTTGAAATCTTCAATACGGGAGAAAGTGAAGGGCAGTGGCTTGCGGGTTTCGACAACGACCGAGGGATTAGGAGAGAAAATGGCGGACTTGTTGTTAGCTTCAAAAGCGGATGGCACCAGCAGGAAGTACCTCTCTGTGTTCCGGAAGTGGGAGACATTTGCTAAAGGGATTGGCGGTAAAAAACGTGTATCAGCAAAACCGATACAACGCAAAGAGGCACTTCCAGTCGAAGCTTTGTTGGATTTGTGTTCAAAATACAAATCAAGTTCGGATCTTTTAATAATCCGAGATATTGCAATGATTCTAGTTTCTTTTGCAGCTTTTCTGCGTTTCGGAGAATTAATAGCTCTTAAAGCAAATGACATGGAATTTAAGGAAAATCATTTTTCAATGAATATTAGAAAGAGCAAAACAGATCAATATCGCCTTGGCTCGCAGGTTGTTGTTGTTAAAGGTGTTTCCGATGCTTGTCCATACAACTGGTTGCATAAATATTTTATGTCTGCAGGCCTGACCACAATTGATGATGTATATTTATTCAGACCATTGTTTCGTTCTGGTGAAAATTGTAAACTTATATACAAAGATAAGCAGATTAGTTACACGAGGGCACGGGAATGCATCATGTCCCGTCTGAGGGAAGTGTTGCCGAGCGCTAACATAGGTACTCATTCATTGAGAGCAGGGGGTGCTACCGCTGCTGCTAACGCAGGGGTTAATGACCGCTGCTGGAAACGCCATGGCAGATGGCGCAGCGAAACCGCGAAAGACGGTTACGTTCAGGATTCATTAGAGTCCAGACTGGAAGTTTCTAGAAAATTGGGTCTATAA

Transcript

Sda_chr09g00985.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-