Gene detail

Detailed information of Sda_chr08g02801.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g02801.1	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Sda_Chr8	202265633	202312560	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g02801.1

ATGGATACAATTTCGCAAGTTTTGTTCATCATCTTTACATCTATTGGAGTAATATCAGGTGCTCTTGATGAGGTTTTGGACCAGTGTTGTGCTACAGGATCGGACTGGGCACTGTTTCCATTTAGTCGATGTGACAGTTTTCCTGGAAAAGTTGATGGCATTGGTGACGACGACCAAGCGAGCTGTCGGAAACTTGTTGAAGTTTGCTGTCTGAAGCAACGACACATTCAGATGTGTGACAAAGGAAAAAGCGCAGCCCTGGAGTCACAATTCTGTGTTGTTCAAGACTCGGAATTTGGCTCAGAACAATATAAGGAGTGCTGCTTGTGTTGTCAGCTAGGTCTGACAGCTAAATCAGCTGGGCTGTCATGTAACTTATTTCGCTATGGTGGGCCATGTGATCACATTTTCTCAGAATGCTGTGGGCACAGTACAGAACCTACCACGGTGATTCCTCCAATGGATCCAGAAAATGACTCAACTGATCCAGAAAATGAAGAGAACTCTACTTCGGAAGAGGATACAACAACGCTAGAATTTCCCCCTGAGGTGCCTCCAACAGATGAAAGCACTCCCTCAGAAGAAAGCACTCCCACAGAAGAAACCACTCCCACTGAAGAAACCACTCCCACAGAAGAAACCACTCCCCTGGAAGAGACCACTCCCCCAGTAGAGACCACACCTTCGGAGGAAGAAGACCCAGCCTTAGTAGAAGAGAGCACCAGTCTTGAGCCTCCATTAGAAACTTACGAGACGACAGAGTCGAGTTTGGAAGAAGTAACTTCCCCTTCAGAGGAACTGACAACTGAGCCTACGAACGTCAACGAGTGTGAGTTATACCCAGACCAGCTATGTGCCCAGATATGTGTGGATTCTTTAGAAGGATATAGGTGCCAATGCAGAGAGGGCTATATCATTATGGAAGATGGCAAGACCTGTCGCATGACTGAGGAAAGTAACTGTACTCCAAACCAGTTCCAATGTATGGATGGAGAGTGTATTAACATAGACTATCGCTGTGATGGGTATGTTGGGGACTGTATGGACAACTCAGATGAAAAGAATTGCGAATCTGAGAAACTTACAGACCCTGTCGTCCCAATTGAACCTATAGATTTTTGTGCAACTAATGACCCATGTGATCAACTATGTGTTAACGGGGCGGAGTCAGCAACATGTGACTGTGAACAGGGTTACCAGCTTCATGTTGATGGTGTGTCATGTGCAGATATAGACGAGTGTGTCCTTGATAATGATGGCTGCCTCGAAGGTCAAATTTGTGTCAACACAGAAGGTGGTTTCACCTGTTGCCCTGGTAACAGTGTTTACAACCCAGAAACAGAAACATGTGATCTGGTAAACGAGAGCCCAACTGAAGCACCAGCGACCTGTGATGATGGATTTGTATTTGATGACAACAGCAAGACTTGTGAAGATATGGATGAGTGTGTCTTGGGAATCTATGTCTGCATGAAAGGCTTGATTTGTCGGAACACTCCCGGATCATATGACTGCGTCGAGAGGGAACCAATGTGCACAGAAGGAACCCTGTTTAACCACTACAGCCAGGCATGTGAACCAGTCGTGTCTGCCACATGTGAGGTGGGATACGCTTACGATGAACAGCTCAGTCTATGTACAGATTTGAATGAGTGTAAGTTAGGAGTTGACCATTGTACCATCGAACAGAGATGCTACAACACACAGGGATCATTCATATGCTGTCTTCTTGATGAGAAATTTAATGGGCAGACACATGCATATATAAATGAGTGTGCAATGAAGATTGATAGTTGTACAAGCTTCTTCCGCTGTGAGAATACGATTGGTAGTTATGCATGCAAGAGAATTCTTGATTGTGGAACTGGATATACAACGGACGCTAGTTCACAGAGCTGTATAGATATTGATGAGTGTAAACTTAACACACACAACTGCCTGGGAATCTATGAATGTCGCAACACATATGGCTCGTTCCGATGCACACCTATACGATGTCCTCCTGGCCACAAGTTCAACAGAGTCACTGGTCAGTGCAAGAAAGTCGACTGCAAACCGGGATTGAAGCTTTACAGAAATTTCGGAAGATGTTTAGATATAAATGAATGTGCAGAAACACCAGGTATATGTGAGAGTGACACCCAGAAATGTGAAAACACTTACGGTGCTTACAACTGTGTCGATCCATGCGGAGAGGGTTACAAGTATGACACAGAGAGCAAGGAATGTGTAGATATTGATGAATGTACGGAAGGAACTCATACCTGTAAAGAAGACCAGACATGTTTTAACCAGGAGGGACAGTATCTGTGTCGGTGTCTGGACGGTTACGAGACTGATATGAATGGACAGTGTGTCGATATAGATGAATGCAGAATGTATGGTCAAATATGTGCCTCACACTCAACATGTGTCAACGTTCCAGGCAGCTATACATGTAACTGCAAATCAGGATATAAGAGTGTTGGAACACAGTGTATAGATATCAACGAATGTAAAGTTTCAACTCCATGTGAACAGGACTGTCAGAACACTTACGGAAGTTACGTCTGTCAGTGCAAAAGAGGTTACACACTTAATGTGGATAGACACACTTGTAAAGATGTTGATGAATGCCAGAGAATTGGATATGGCCGTGGACGACTCTGTGGCGGATCCTGTCGGAACACCCCTGGATCTTATAAATGTGAATGTCCAGAAGGATGGAAGCTGTTTGATGGAAGATCATGTCGAGATGTCAACGAATGTGAGACTGGAGCTGCGTCATGTGCTCAGAGCGATGATGAAAAATGCTTCAATATAAGAGGAGGATTCAAATGTCCTGTCGTCACATGTCCAGAAGGATTTGTACCATCATCCAGTCGCATACATAAAAACAGCATAAGATGTAAGAAGATATCATTCCCGTGTTCACTAGGAGATAGAGAATGCAAAAACCAAACGCTTTCACATTCATACAACTTCCTGTCATTCCCAACAAACATCAAAGTTCCGTTGGACTTATTTGCAATGCGAGCTCCAGCGAAGCCTCAACGATCTTATCGGTGGGATCTGCGGCTTCTGAGTTCAACAATGCCGACGGGAACTGACAACATTGAACTTGCGACCAGGAACTTCTTTAACCTTTATGACTACTACCCATCCAGGGCGGTCGTTTCGTTGATCCAGCCTGTACAAGGACCGCAGGATATCGTGTTGGAATTAAACATGTTGATTAAGGAACGAGGATTCGATGCAGGAAACGCCAAAGCTGTTATCACTCTGTATATAACGTCACAAGAGAAGCCATAA

Transcript

Sda_chr08g02801.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050751	Family	Extracellular matrix structural protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-