| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Sda_chr08g01046.1 | METHYL-CPG-BINDING PROTEIN | Sda_Chr8 | 74656588 | 74703955 | + |
| CDS | |||||
| Sda_chr08g01046.1 | |||||
| Transcript |
| Sda_chr08g01046.1 |
| Protein |
| Sda_chr08g01046.1 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | MBD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00730 | HhH-GPD | HhH-GPD superfamily base excision DNA repair protein | Domain | Interproscan |
| PF01429 | MBD | Methyl-CpG binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001739 | Domain | Methyl-CpG DNA binding | Interproscan |
| IPR003265 | Domain | HhH-GPD domain | Interproscan |
| IPR011257 | Homologous_superfamily | DNA glycosylase | Interproscan |
| IPR016177 | Homologous_superfamily | DNA-binding domain superfamily | Interproscan |
| IPR045138 | Family | Methyl-CpG binding protein MeCP2/MBD4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15074 | METHYL-CPG-BINDING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006284 | Biological Process | base-excision repair | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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