Gene detail

Detailed information of Sda_chr08g00948.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g00948.1	SECY/SEC61-ALPHA FAMILY MEMBER	Sda_Chr8	68504538	68587687	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g00948.1

ATGGCGATGCACATTCCTAAACCTCCCGGCTTCGGCCAAATGATGAAAGAGGGTGCACGGCACTTCTCTGGTTTAGACGAAGCTGTTTACAGAAATATAGAAGCTTGCAAAGAACTAGCAGAAACAACTCGATCAGCTTTTGGTCCTCATGGGCAGAACAAGATGGTTATTAATCACTTGGACAAACTGTTTGTCACGAATGATGCAGCAACCATTCTGTCAGAATTGGAGGTGCAACATCCAGCTGCAAAGATGTTAGTTCTAGCGTCACATCAGCAAGAGAAGGAGTGTGGTGATGGAACAAACTTTGTACTCATGTTCTCTGGTGCTCTTCTAGAGAATGCTGATGAACTGTTGAAAATGGGTTTGTCCGTTACAGAGGTAACAGATGGTTATGACCTAGCGACCAAGAAGTGTTTGGAACTCCTGCCAGAGTTGGTTGTCGATGAGGTAAAAAATCTCAGGGATAGGAAGGAAGTGTGCAAGGTTATCAGAACAGCAGTAATGAGCAAACAGTATGGTCATGAAGACTTCTTATCAAAACTCATCACAGATGCATGTTTATCAATTCTATCGCAGAAGTTGTCATTCAATCCAGATAACATAAGAGTTTGCAAAATACTGGGATCTGGAATCTTACAGAGTGAAGTATTACAAGGAATGGTGTTTAGAAGAGAGGTAGAAGGAGATGTAACAAAAGCTGATAAATGTAAAGTTGCTGTTTATTCCTGCCCACTGGACTCTATGCAGACAGAAACCAAGGGCACAGTTCTGATCAAGTCAGCTGATGAACTAATGAACTTTAGTAAAGGTGAAGAGAATTTAATGGAAGAGAATATGAGACAGATATCTGAAGCAGGATGTTCCGTTATTGTTAGTGGTGGTAAAGTTGGAGAGCTTGCTCAACACTACTGTAATAAGTTCAACATAATGGTGGTCAGACTTATGTCTAAGTTTGATCTGCGACGGCTATGTAGAACACTTGGTGCTACAGCTCTCCCAAAAATTACCAAACCAACCCCAGAAGAGACTGGATACTGCGATCATGTGTATGTAGATGAGATCGGAGAAACTAGAGTAGTTGTATTCAAACATGATAAAGAAGAGACAGCTATAGCAACTATTGTCATCCGAGGGTCAACAGACAATATCATGGATGACGTGGAAAGGGCTATTGATGATGGAGTCAACACATTCAAAACTCTCACAAAGAATCCAAAATTGCTCGCTGGTGCCGGTGCCACAGAGATTGAGCTCGCCAAGCAACTCACATCATATGGAGAGAGTCTCCCTGGTCTTGAACAGTATTCAGTGAAGACGTTTGCAGAATCATTGGAAGTTGTTCCAAAAGCTCTTGCTAATAATACAGGTGTCAAGGCGACAGAAGTACTTTCTCAACTTTATGCAGCTCATCAAGATGGCAAGAAAACTGTTGGAGTTGATGTGGAGTTATTTGTTGCTGGACTGATAGTTCTACTGCTTGATGAGTTACTACAGAAAGGATATGGATTAGGATCTGGTATTTCATTGTTCATTGCCACAAATATTTGCGAGACAATCGTGTGGAAGGCATTCAGTCCTGCTACTTGTACGGAATTTGAAGGTGCAATCATTGCTCTCTTCCATTTACTTGCCACAAGAAACGACAAAGTCCGAGCCTTACGAGAGGCCTTCTACAGACAGAACTTACCAAACTTAATGAACTTGATGGCAACTGTTTTCGTTTTTGCAGTTGTTATATACTTCCAGGGTTTCAGGGTCGATTTACCAATCAAATCAGCAAGATTCAGAGGACAATACAGCTCATACCCCATAAAATTATTCTACACATCAAATATTCCAATCATCCTACAAAGTGCATTGGTCTCCAACTTATATGTTATATCTCAGATGTTGGCAGCTAAGTTCAGTGGTAACTTCATAGTGAATCTCCTCGGCACATGGGCTGATGTTGGTGGTGGTGGCCCTGCCCGATCTTATCCAGTCGGTGGACTCTGCTACTATCTGTCTCCGCCAGAAACGTTATCACATGTGGGGGAGGATCCTATCCACGCATGTTTATACATATGCTTCATGCTTGGCTCCTGTGCTTTCTTTTCAAAAACATGGATTGAAGTTTCAGGATCCAGTGCAAAAGATGTTGCAAAACAGCTGAAAGACCAGCAGATGGTGATGCGAGGTCATCGGGATAAATCTATGATCCATGAACTAAACAGATATATCCCCACAGCTGCAGCCTTCGGTGGTCTGTGTATCGGAGCTCTTTCAGTTATGGCAGACTTCATGGGTGCCATTGGAAGCGGAACTGGTATCTTATTGGCTGTAACGATTATCTACCAATATTTCGAAATATTTGTCAAGGAACAGAGCGAGATGGGAGGAATGAGCACACTATTATTTTAG

Transcript

Sda_chr08g00948.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF00344	SecY	SecY	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002194	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR002208	Family	SecY/SEC61-alpha family	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR012721	Family	T-complex protein 1, theta subunit	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR023201	Homologous_superfamily	SecY domain superfamily	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR030659	Conserved_site	SecY conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10906	SECY/SEC61-ALPHA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005048	Molecular Function	signal sequence binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005784	Cellular Component	Sec61 translocon complex	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0006616	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0008320	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0031204	Biological Process	post-translational protein targeting to membrane, translocation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-