Gene detail

Detailed information of Sda_chr08g00904.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g00904.1	TRANSCRIPTION FACTOR E2F	Sda_Chr8	65488510	65526465	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g00904.1

ATGAGGGCCAAACCATGGTCATCCCGGCCTATCTTAGGTTCTGAGGACCCTACATTTAAAGTCCCTAGTGGAAATGCTGACTATGTGGAAGAATCAATGTTTTTTTGTATTTCAGGTGTTATGGAACGTGCCTCAGACCAGTTGTTTCAGCGATTGAGATTGCAAAATGAAAGAGATGATGAAAGTGATGGAGAAATAAGGACAATCCTCAAAGATCAAACACAGTTTTTTAAAATAGACTCTGAAAAAATGAAGCTAATAAATTCCTCCAATAAAGAAAACCGACATAGCCCTGCAAAGGGTTCTCCTCGGGGAAGAGTCCGTCAGCCTCTCGAATCGTCAGCTACCTCCTATGATAATCTTGGTGTCGAATCTGACTTACTTGGTGCATCTCATATGAGAAATGCTGCTACAAGTACATGTGCTCCATCTCCGAAATCTAACTCTGAACACCCACCTTCACCAACTGCTAATTTAAAAATGCTGTTTAGTGCTGTTAGTCAAATAGAGAAAGCGAGATGTGATATGAATAGTGATACGACTGATTCTAGTGCTATTAACGGAGTGGCTGATGATGCTGCTTCTGACTTTGATAACGATCTCATGTCATCCCAAGAAAGTGATAATGGAAGGACTTGTGGATCTAGGAAAGAGAAGTCATTAGGTTTATTATGTCAAAAGTTTTTACAAAAATACAAAGAATATCCAGAACCTCATGAAAGATTAGAGATCAGCTTAGATGAAGTAGCCAAAGACTTAGCTGTTGAGAGAAGGAGAATTTATGATATTGTGAATGTGTTGGAGAGTGTGGAGCTAGTCAGTAGATTGGCAAAGAACAAGTACACCTGGCATGGAAAAACAAATCTCATCACGACACTCGCCAAGTTAAAGGCTCTTGCTGACAGCGAAGGGTTTGCAGAACAAATTGACAAAGTGAAGGTTTTTGAATTCAATCGAGAATTAGATGCTGTGGCAAACAAGGAGATCTGTCAGAACCAGCAAAAGATAGATGATATTCTTAGTTCAGAGACACTACTCAGAAAAGACAAATCACTGGGTATTATGAGCCAGAAGTTCTTGATGTTGTTTCTTGTGTCAAAGCCGAAAACGATAAATTTGGACCTTGCTGCTAAAATTCTGATTGGTGATCCAACAATAGACAGAACTGAGAGCTCAAAATTCAAAACAAAAATAAGAAGACTGTATGATATAGCCAACATCCTTACAAGTCTAGACCTCATCCGTAAAGTTCATGTGACAGAAATTAGGGGAAGAAAACCTGCTTTCAAATATATTGGACCAGATATTGAACAATCACATGAGTTATCTATTTGTTCCGATGGCGTACACAGACCAAGTTCCAGACATTCTTTGTTGGACTGTGTCAGGAATATAAGTGGTAAGCATTTTTATTCCCCACCCATTTACGTGAGGTACATGTATTCAATGGTATCCCAGCCGTTGAATGTATATTATTGTATACCTCTTAATGAAAGTTCTGGACAGAATGGAGCAAAAAAGATTGCCTTCACACGTCATTCATCATTTGACCAAATATGTAAAGTTGCTGAGAGAGAAAGGAAGAAAGTTCTGGCGCGTCACTCATCATTTGATCAGATCTGCGCAGTGGCTGAGAAGGAGAGAGATAAGCTATTCAATATCTCTCAACCATCAAGTCCAGTTGTTGAAGCCCCTTCAAGGAAAAATGCAGATCACTGGAATGAAATGAATGGCATCCACAAAAAGGGATCCGACAATCAACCTGGGATGCATGATATTAATAACAATGATAGGCTAACGGATTACTTGTCCCCAATCAGACAGCAAGATCCGAAAAGTTCTAGTTATTCAGAGGCAAAAACTAAGAAATCAGTCAGAACTGAAACTATCATTATCAAAACCAAAGGCAACCATGTATCACAGAGACAGCCAACTATGATTCCACTAACGCAGGAACAAATACAGGCCGTGCTTAGATCTCTCAAACAGCCAGGAACGACGGAGGACCCAGTCGAAGAATTTCTCTCTCCAGCACCACAGTCTCAGGATCCAAAACAACTTGCTGAACTAAAAGAATACAATGAGAAAACACCAGTACAGGTGATGTCCAATAACAGTGACACTAGTAGTAATAAGAGGGTTCAGTCACCCATAATCCCTCTACCGGAGGTTGTTAAAAGACGGAAGGTGGATATAGAAGCTATTGAGGCTGATCTTGTATCGCCGACGGAAAATCAGACTAAGATTATCATAAAAGAGAAGCCTGTGCAGTTTAAAGCTTTACATTTGGCTCCAGAATTTAAGCGGTCTTCACCATTGAATCGTCTGCCTACCACGCCTATCTGTCGTAAGATTTCTTATTCTGATATGGATCTTGCATCTCCTTTAGTATATGAGGATTCGAATGTGGAAAATTTCAAATGCCGTCAACCACAAGTTACAAAAGCTGTGATTTTCAATCCATCAAGTATGGCTTCAATTGGGAACAATACTGTGTTTCGACCAATCAGCACTGTTCAGTCATCAGTCATGAAAAGTGTGACGCCAACAGCTATGTCAGTTATTGCAAGACCACACCCTGGATTTACCCAAGCTATGCAGATACATTACAATGCAGCAGTGAACTCACAAGGACAAACTGTGAATATCATCAGACCTATAAAGTCTGCCAAAGTCATTCCACGAATGGCTACCAGCCAGCCCAATGGTTTCACACCTGTGCAAATAATCCAGCCAATGAGTTTGAAACAATCGCCTAACTCATTATTGGAATCTGAGAGCACTAAACTGTCTGAAAACTTGTCTTTCCTGGATGATGGAAAGTGTAAAAATGGTGGGAGCTCACTGAACGAGGAAATATTAGTAGGTATTAAAGAGAAACCACTTAGTGACGACAGGAATGTGAAATGGAGTCGAGCGAACAGACGGTGGATGAAACCACAGACGAGGGCTCAGCGAGGTAACGAATGGCTTAGAGAAAGAAAAGACGCACAAAGGGAAGCCAATAGGATCACTCACGATGAATTGGAGGACATTCCACCTTTTGTTAGAAAAGAATACAACGCTTACGTCCCCTGCAGCACGTGTATGGTTCCAATCCAAAAACATCTTCACAACATGAACAATGTAATAAAACAGATCCTTGTGGAGAACGATGTGCTGAGAACACAGGTGACCGATGCAAACGCGAGGCTAATTTTAGTTCTGGACGCAGCTGAGAAAATGGAGAATGAGTTTCAATCTTGGAGACAGAGTTTAAGGTTTCCTGGGTTATCTCCAATCGACAGCCCCTCTGTCGCTAACATCGCAGAGTCAACAAATCAGGATGCGCGAATATATCGAGACTGTCAAGATACGTACAATAATGGTCGACGACGCCCCGGTGTCTACACTCTACAAGCGGTAGGATCTCCATATCAAGTAAATGCATTCTGTGACGATGGATGGACCCTTATACAACGAAGATATGACGAATCCGAGGACTTCTATAGGTATCACGCGGAGTATAAGACAGGGTTCGGGTCTCTTGCTGGCGAGTTCTGGCTTGGACTGGAAAATCTTCACGAGATGACCAAACTAACAAACTACACACTCCGGATCGACGTCACGGACTTTCACGACAAGCTTTATTACGCTGTCTACGACGGGTTCTACATAGACACGGAATCACACGAGTACGCTCTTCGAATCGGTCGTATGCTTATATCCACAGAGGACAAGGACGGGTTGAAGGAACTCAACAAGGTCGGATTCAGCACACGTGACCGCGACAACGATAAATGGAAACATGGGCATTGTGCGCGTCATTATAAAACCGGGTGGTGGTCGACCAACTGTGGATCAGATCTCAACAGACGTTACATGAGATGGTCCAATTTAGTCGTCAAAACCTCCATGATGCGGATAAAGCCAACACAAGACATCAAAGACAATGATTTGTTACCAGTAATGTAG

Transcript

Sda_chr08g00904.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	E2F

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF02319	E2F_TDP	E2F/DP family winged-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003316	Domain	E2F/DP family, winged-helix DNA-binding domain	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR015633	Family	E2F Family	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12081	TRANSCRIPTION FACTOR E2F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0090575	Cellular Component	RNA polymerase II transcription regulator complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-