Gene detail

Detailed information of Sda_chr08g00573.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr08g00573.1	ZINC FINGER PROTEIN	Sda_Chr8	41916684	41932714	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr08g00573.1

ATGAACAAAAAGATACGGTGGGCTGACCCAGCAGGAGTTGCTAACAACTGGAGGGATAAACTAAGTTACGATGGTACACTATACATCATCGGTGGGTTTTGCTGGTTGGACTGCCAGTATGGCCAAGACCACAACAAAGTGTGGAAGTTAAAGGAAAGAGAGAAAAAAGACAATGTCACACACGAAGACACACCTGACCATTCCTATCTGGAGCGTAATCGATATGCTGGCCAGATAACAAAAAAAATGGATTGCCCTGCGAAGATTATGATGCGGGAAGTCATTAAATTTCCAGCATACAAGCTGAGTATTGAGAATCCCACCGAGTATGAAAAGAAGAAGGCTTCGAAAAGACTAAAGTCTGACTTGCAATCTCCAATCGAGAGAAGAATTTATATCCAGTTACCGGAAACAAAGGTCCCAGTTGCAGTTTCAGACGCAGATGAGGAACCACCAGTCAAAACTTATGTTTCAAACTTGGATGTCACTGGCATATATCTGCCCAATATGATCAACAGTCAGGAAATTCTACCAAAACCAGATGTATGCACGGGAGAAGAGGTCGTTCAAACTTCTGTCTTCTCAAACAAATATCCTGGATCAATTATTAAGAAGCCAACCACTGCAATCGGAGATAGCATGGTATTGTTACCAAATTTACCTTCACACTGGTTGGCAGTAAAACAAGAAATGGAGAAACAAAACAAAAAGAACAGCAGGATACAACAAATGAAAGAAATGAACCCAAACGCATCGAGGGGTGATGTTATGGTTGCCCTATCGAAGGACCCAGAAGGTACAGGTACTATGGAGCCAAAGAAGAAAATGAGGACAAGCACGAGTCATGTAAAAAAAAAACCCATAAGGACGTGGCATCCACAAAATCTATTTTTTATCACATCAGAAAACTCATCCACGATGCCTGGTGCATCAACGCAAACTGATTCATTTCGGTCTGAAAACTTATATGCATGTATGAAGCAGGATGCATCTACACAAACTGTTTCCGAAAACTCAACTTCAAAGCATGATGCAACCACACAAACTGTTTCTGATTTACCCCAAAACATGTCTGCAAATACACAGCAAAGTGCTACAATAAAATGTGTTCCTGTTTTCTCCGAAAACTTATCTGAGCTGCAAGACTTGTTCAAAATATCTGATTTAGACATACTAGTAGGTTATAAAAGTCATGAAGCAGATACTAGTATAGCAGTAACTGTACCACCAATAAACGACACTGAAAGTCATACTATGGAGTCAGTCGCACCAGTAGAAGACATTGGAAGTCATACCATGGAGTCAGTCGCAACAGTAGAAGACACTGAAAGTCATACTATGGAGTCAGTCGCACCAGTAGAAGACACTGAAAGTCATAATATGGAGTCAGACGCACCAGTAGAAGACACTAACAGTCATTCACCAGAGTTTGTATCATCCACTGAAGTCACTGATAGTCAGTCAACAGAGTTAGTAGCACAGAGAGCAGGCACTGACGTCACAACGCCACATCAGGGTACTAGCTACAGGGAAACTATGACGTCTATGATGTCCAGAACAGTTGAAGAAATGGAAGTTTCAATAGTGGACTCATCAAAATCTGCCCGAGAACCTTTGAGGAAATGCAAGCATTGTGGCGAAGTTGTGAAAACATTTAAAGAGCTAAAATGGCACATGGATGGTCAATGTTTGCAATTTAAGTGTAAAGGTTGCCACAAAACGTTCCCATTCAATTCATTGCATGACAGAGAAAAATATTGTGCACAACAACACATACTTTTCAAATGTGATGCTTGCGGTCTAGAAATACAGAAGGCACAGTTAAACAAATCAAAACCAAAATTAAAAACAAGGAAAACAAATTCTTATTGCGATAGAATCATTGAGTTAACTGAAGACAACAAACTCGTCACTAGATGCCGAGCATGTGGGAAAATCCTCGCAGATGAAAACGATGTGACCAATCACATGAACCTACACAAAGATAGAGATGTGGATCCTAAATGTAACGTCTGTGGTAGATTATATTCCACTCTTTCTCATTTAAGAAGCCATATGGCTATCCACTTTGGAAGAAAGAGACGAGCGGAAGCCATGAAATGTGACATATGCCATAAATTGTTTGCAACGAGACATAAGTTCAATGAACACATGATGTTACACTCTGGAGTCAAGTCATTTATCTGTACTGTATGCGGGAAGAAATTTGCGCAGAACAGGATTTTGAAAGCTCATTTTAGAATGAAACACACACAAGATAGACCATTCTCTTGTACGGTGTGCGGGAAAACATTCAAGTCAAGCTCTTGTGTTAGTAGGCACATGTTGCAGCATGAGGATAAAAAGTTTATTTGTCATCACTGCGGCATGGAATTAAAAACATCCAACGCACTTTACTGTCATGACTATTCTGTTCACAGAAAGATGATTCCACCATGCAAACAAAAGTTTCAACAAGCACTAAACCAACTGAAGTTTTATGGCATCAAAGAGCAGGAGTGCACTGAAGAAAATACCCGTACATTTTCTTTGTCGTATAAAGCCCAACGTAAGCCGAATGATGGTTCTTCAAGTTCGTTGTATGTAAACATAAAAAAAAACCCGACATGTACATGTAAGTCCCGAAAGAAAACTATGAAAAGAACGAAAATATGTGTTCACGTGATTATAATTCTCTTATGCTTAGGAATCGAAGACGGAGACATCAAGCTGAAAAAATGTGAATATTCAGAGTCGGAAATATCAGACCTTCTGACCAAAACCTTCCAGCAAAAGTCAGCATCTCTCCGGGTGAATGAGTCTTCTTTGGCTTATAATTCAGAAGGAGATGCGACCGGTGATAGGCCGCACTGTGTCACGTGTGGCCAGATTCCTCCTGGTGATATTTCTATAAGCATTTCATGCATAATTAACTTCACTAAGGAAGTGAGTTCATTCCGATATTGTCTAAAGCTGGCCTGTTATAAACGTCCACCGCAGAGGTCGCAATTGAAGACGTTACCACGCAAGATCAGAGGAGAACATGTTACAGAGTCGCTCAGAGAATCGGCATCGCGAGCTGGATTCACAATTATTTGA

Transcript

Sda_chr08g00573.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF15299	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR029309	Family	Calcium-responsive transcription factor	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24376	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-