Gene detail

Detailed information of Sda_chr07g02833.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g02833.1	IMPORTIN BETA	Sda_Chr7	222582139	222673173	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g02833.1

ATGTCTGTGATGTTGCGACATAGTTTACAAGCTGCACATGGCTGCAAACTTCTGCCAGATTACGTCACATCAGAATGTCCAGACGATCAAAGTATCCGACAGTTTGCTGCAGTTCTTCTTCGGCGGAAAATTTCTAAACAGAAACAGTGGAATGGTTTGCCACCTGAAGTTTGTCAGAAGCAGTTTGTTAGGAACTCTGTGTCACTAGTCATTGGAACAGTAGCAAGACATGATCTGCCAGAGAACAAATGGCCACAGTTGTTCCAATTTATTCTGCAGTATACAAAGAGTGCAGATCCTGCACAAAGGGAAATTGGAATGTTTATACTTTACAAAGTATCAACCGATGCCACAGAAGAACTTAAGCCACACCTACTTTCATTGTTGGAACTGCTGGCACATGTCATCAATGACGACCAGAATAAAATGGTGCCGATATACGCGATCAAAACTATGGTTGAGCTTATGTTCTTTGTTGGCGAAGATGAAATGGTGATGTCATTGACACTTTCATTTTTAAGTTCCACCAGATTTACGCTCTCAATTCTCTGGTTACAGGACCAAGCTTGTGAGGCGATGGAGGTGTTCGATGAGATGCTGGAGACTGAAGTCGGAATAATCGCATCACACATCAAAACAGTTCTCGACTTTTCATTAGAGGTTTCCTCAAACAATTCTTTAGGGGACGCTATACGTGTGAAGGCATTGTCATTTGTTGCATCAGTCATCAGGTTGAAAAAAAATGTGATAAAGAAGCATAAAATGGTGAACACAATTCTGCAAGTATTATTTCCTATAATGTGTGAGAAGGATGACGACGATGATGACGAAGATGATGAAGACGACATCGAGTCGAGCTGTCCATCCAAATACGCTGCTCAGGTTTTGGATGGTATGGCTCTACACATGTCCCCTGAAAAATTGGTTCCAAATTTGATGGCTATGGTGGAACCAGCATTAGTTAGTGAGAATCCAGGTCAGCGGAAGGCTGCTTATATCGCCATGGCTGTCGTAGCTGAAGGATGTGCCGACTACGTTAAAAACAAACATTTGCAAGTTGTACTGAAGTGTGTCTGCAACGGACTGGGAGATGTCGACACAAATGTGAAGAATGCAGCACTATTTTGTATGGGTCAATTCTCAGAGTTCTTTCAGCCTGAAATCTCTAAGTTCGCTTCAGAGATCCTGCCCTTATTGTTCGAGCATTTAGCCAAAGCTAATGCTGATGCTGAGAAAAACCCCAAAGGTCTAGTCAAGTGCTACTACGCTCTCGAGATGTTCTGTGAGAATTTAGAGAAGGATATCCTGCCATACCTGCCTGGTTTGATGGAACACTTGCTCACAGTTCTTAAGACGTCGACGGATATGAAAGCCAAGGAGTTAGCTGTTAGTGCTATCGGTGCCACAGCTAATGCTGCCACTGAGGATATGAAGCCATATTTCCAAGACATTATTGAGATTTTCAAGACATTCCTATCTTCCTGGGATAACGAGGACGTCAGAAAGGTCCAAATTCAAGCTATTGATACACTTGGAGTTTTGGCTCGGACTGTTGGAGCTGATACATTCCTTCCTCTGGCTGCTGAATGTATACAACTCGGATTTAATCTGCTTGATAATACTGATGACCCAGATCTCCGGCGATGCATATATGGCATGTTTGCTGCTCTGTCATCAATCCTGAAGGTTGAGACGAGAAGTCACCTGGCAATCATGACTCGTCACATGATTAACTCAGTCAAGTCTACGGAAGGTGTTAAGGCCCACCTTAAAGAAGACTCCGAACAGATCGCTGCTTTTGATGAAGATGAATTGGTCGATGATGTTGATCTTGATGCCGATGATGACGCATCTGTCCAGGAAATTGCTGGGATCAGTGTAGAGAATGCTTATGTAGATGAGAAAGAAGATGCATGCTCTGCCCTGGGAGAACTGGCTGAATACACACAGGAAGCCTTCCTGCCATACCTCGAGGAATCGTATAAGGAGGTGGTAGACTTATTGGAGTATCCCTCAGATGGTGTGAAGAAATCTGCTATTGTTTCATTAGGGCAGTTCTGTAATTCTCTGTACAAATCTCAAAAGGAGTCTGAAGCTCTGTCACTCATGCTGACGACGATAGTTCCTCAATTCTTTGAGATCATCCGAACATTTGAGGATCGATTAGTTGTGATGACAGCTATCGACACAATACAAGGAATGCTGGACAAAATAGGGCAGTCGTTCCTCACAATAACAGGGTCCACTGATGTCATCCTCGGTGCAATGAAGGAAGTGTTTATGCACAAGCTCGCCTGTCAGGATGTAGCAGATGCCGAAGAGGATGATATTGCGGAATATGACGGTATGCTTGTAGAGTCTGCCGGCGACGTGCTTCCAGTGATGGCCAAGATAATGGGTGGACAGAACTTCCTTCCTTTCCTCACGGGCTTTCTTCCAGATTTGCTCAAGAGATTAAAAGAGACGAGTTCGACTTCAGAGAAATCGTTTGCAGTTGGTACTCTCGCTGAAATATTTGACAATTGTGGTTCGATTGCTGTTAATTTTGTGCCGACGCTGTTTCCCCTATTCTCAAAAATGACGAAGGATGAAGATGATGAAGTTAGGAGTAATTCTATATTTGCTGTCGGTGTTTTAGCAGCTAACGGTGGTGAAATCATGCAAAATCAGTATCCTGTGATATTGAAGTCGTTGTTTGAGATTCTGAACAATGAAGAGAATGCACGGGTTATAGACAATGTGTGTGGGGCAACATGTCGGATTATTACTGCTAAAAAGGATTGTGCTCCATTAGAATATATTCTGCCTGTGATAATGAAATGCCTTCCATTGAAAGAAGATAATGAAGAATACAAAACTGTGTTTACCTGTCTACTGAAACTCTACAGCGAAGGAGACAATCATGTGATGAGTTTCATACCAAACATACTGAAGATAGCTGCTCTCGTCCTTGGAACTGAGAAGATAAACAAAGAAACTGAGGCCTTACTTGTTCGGTTTGTGAACGACGTCCATCAGAAGTCACCAAATGATCTGACCTCCCTGCTTACGTCCTTACCCGAAGACGAACGAAATTATCCACTATTCATAAAGACTATACCGACAGACAATGAGCTTAAGTTTTACTACACAGTCCATATGTCCTTGGATGTTGTGGAAGAAAAAATCATGTCAGTCGGGAAAAACACAAACGATTTGAGGGAACTTTATCTTGGGTTGCTCTACCCAACAGAAGATTACAAAGTCTATGGCTATGTGACAAATTCCAAAATAAAATTTGTTATTGTAGTGGAATCATCGAACACATCGTTACGAGATAATGAAATAAGATCGATGTTCAGAAGGCTACACAATGCTTATGTTGATATGATGTGCAATCCTTTCTATACTCCTGGCGAGAACGTAACTTCAAAGGCCTTCGAAAACACTGTGATGTCTATGATTCAACAAGACTAA

Transcript

Sda_chr07g02833.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04628	Sedlin_N	Sedlin, N-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006722	Family	Trafficking protein particle complex subunit 2	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021133	Repeat	HEAT, type 2	Interproscan
IPR034085	Domain	TOG domain	Interproscan
IPR040122	Family	Importin beta family	Interproscan
IPR044760	Family	Trafficking protein particle complex subunit 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527	IMPORTIN BETA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608	Molecular Function	nuclear import signal receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-