Gene detail

Detailed information of Sda_chr07g02612.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g02612.1	N4BP1-RELATED	Sda_Chr7	205747214	205815875	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g02612.1

ATGTATGATGTAGAAGTTATCTTTGGTGACATTGCTGAAGAAAAACAATGGATACAGGTACGAGGTGGTCAAGGAGACCGGAAAAATGCTAAGGAGTATATTATAGCTCTGTCTCATCCAGAGGAGGTTTATAAATATCAGTATCCACCAATTCTTGATGTTGAGCTCGGCGATGGTGAACTTTTGCAGGAAATTGAAAAACAGAGTAACGCGGTGATAGTTAGGTGCGCTAATGTTAGTCAGTTAGAAATTCATGGCACTTCCGTGGCAGTCACGATAGCATGGTCGAGAATAGATATGCTAATAAAAAGTGTCCGAGGAAAAGGGCAGCCTGACACCGGTGGCAAGACTTCCCCCACAGATGGGGCAGTATTGGAGGCGCGATTTGACGACAAACTCCAGAGGGCGTTCTCGAGATACAGTGATGGAAGTACAAGCATGGATGATTATCGCAGCATTCCAAGTTCTGTAAAAGGCGCAATTCTCAAAACGATGAATACTGATAATGATGATATTGAGGATGATGACCTATTTGGAGGTAAAGATGGTAAGCCATCTTATCCTGTTCCCATATTCTTCTGTGGTACTGACAACCAGAAAAAAGACCATATCACACAAGAAGTTGGCGGTCTAAAAATACATGCTTCACAGGGAGGTAATTCTAAATTTCAAAATAAGAGCAGTAAGCATAGTTACTTAGCAGAAGTCGGCTTAGGCTCTGGTTATGAGGAGAGTGATATTGAGAAAGCTATGTTTGTTGCAACTGATCAGACCTCACCTGTTGAGTTTCTGAAAATTTTATCAGAAATGTCTTCTCGTAATAAACACGAGGTCGCGGTTAAACGAGATTTACCAGATATTTATAAACATAAATTCTTAGAGGACGATCAGGATCTTCCATTGGAGCAAATGAAGCAGAAAAATATGGATAGACAGAAGGTACTTTTAGCTGCAATTGATGATAAAAAGAAGGAAAGTGATAGTGATGAAAAATGTGCCGCCAGGGTCATTAAGCCTAAAAAGAAAAACAAAACGAAAAATAAATCAAAGACTAAATCTGGTGAAAATTTCAGCAGAGATACTCCCAAAATGCTGGTCACTGGAAAGCAAGAGTCACCTCTTGATAAAGTCATGCTGGATGTAACGGATGATGATGATGATGATGACGTAATTATTGAGGATGAACAATTGATGATATTTGATGAATTCAATGTATTAAAGGATGCTATTGAGTCGGCTGAACCTCCAGAAATTTTTTACGGTTCACCGAGCAGTTCTTATGCTTACAACAGGAACCGGATAGCTTCCGCAGATTCACATATTCCTTCCATTTCCCAGTATAAAAATGATCCCGAGCAGACTAAAATCGTTCAACTCCATCATGGGAATTCTGATTTAACAGGAACTAGTCCGAAGTCCCGACAAACTACAAGTCGCAAGGACAGACAATTTATGAGCAGTCCTAGTCGTAAAGTTGCTACTATTCCGCCGACAGTTTTGATGAATGAGCGTGTTCCTACCCTTCACCAGACTCCATCACACCACCAGGAATGCGATTTGAGATACGTGGTCATTGATGGAAGCAATATTGCTATGACACATGGAAATGGACAGGTATTCAGCTGCAAGGGAATCAAACTGTGTGTTGATTTCTTTGCGAAAAGAGGACACAGTGTTACAGCTTTTGTGCCGGCGTGGAGAAAGTACACACCTGGGCTCAGGAACAACATCAAAGATCAACAGATACTGCTTGATTTAAAGGAACAGGGTTTCCTTGTGTTTACTCCATCCAGAAAGGTCAAGGGCAGATTGATAGTCTCATACGATGACAGGTATGTGTTACAGTTAGCAGAAGACGAGGAAGGTGTCATCGTATCCAATGACAACTACAGAGATATCATGAACGAAAAGCATACCTGGAAGCATATTGTTGAGGAGAGATTATTGATGTATGCTTTTGTTGGAGATAACTTCATGCCAGCACCTGATCCACTGGGTCGAGATGGTCCAAAGTTAGATGATTTTCTAAAGAAATCAAGAAAAGCACCGTCTCCTGGTTCATCACAATACACAAATCCAGCTAATATGCATCCAACTCGTCAGCCATATGGATTCAGTTCTTCAAATCAAGATTCTCGGAATCAACGTAAGTTTGGACATAAGAGTGCAACAGACGGTACCAAATCTCCAAGCAAGAAAAATACGTATATTCCTGCTCTTCTACCAGGAGGATTTCAACCTCATCAGTTCAATTTTACTACTCAAAGACCACCAAATTTCAATGCATCTTCATGGCCAACTTCAAATATCCCAAGCCTGTTGCAAATGAACCCCCAGAACGTTGGTCAATTTGGACCTCATAATTTCCCGCAGCATGGTACAGCAGGGTATAACCCAAGAAACAATTCTTGGCAGCCTGCTGGGAATGCAAAGAACATGATTTGGAATAATTCTGTGCCTGACAGACTACAGCTTGATGGTGATAGTGAAATTCCTTTATTCTCGGATGCTGCTCAGCCAGGATTTGGTTCAAGTCAACACTCAGGTGCTAACAGAATAGGAATGGCAGACACAGAAAATGGCGATGTTTATGAGGCCGACACCTTCCAAGAAGAACAAAGCTTTGACAATGAAGCCGGCTTGGATGGCGAAGGAGAAGCAAATCAGGACGAATCGGTTGCTGACGACCCTGAACTGGAGGCAATAAAAGCAAGGGTGCGAGAAATGGAAGAAGAAGCAGAAAAATTAAAAGAAATGCAGAGTGAAGTTGAGAAACAGATGAATATGACTTCACCAACAGCTTCGGCTTACCCAACACCAGATGAGAAGATGGAAGCTGATACCAGATCTGTTTTCATAGGAAATGTTGATTATGGCGCAACTGCAGAAGAATTGGAGCAACATTTTCATGGTTGTGGTTCTATCAACAGAGTCACTATTCATTGTGACAAATTCACAGGCCACCCCAAAGGGTTTGCGTATATAGAGTTTGCGGATAAGGACTCGGTGCAAACAGCAATGGCCCTTGATGATTCCTTGTTCAGAGGAAGACAAATAAAGGTTACAGCGAAACGAACCAACAGACCTGGAATCACTTCCACTAACCGAGGTCGTCCAAGATTCCGACGAAGTAGTAGAGGATCACCGTATGGTGGCTACACACCAAGAGGAAGATTCAGACCAAGGCCAAGGCGTGCACAGTGGTACTCCCCATACTAG

Transcript

Sda_chr07g02612.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF11977	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR021869	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051101	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876	N4BP1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0036464	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-