Gene detail

Detailed information of Sda_chr07g02196.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g02196.1	BETA-HEXOSAMINIDASE	Sda_Chr7	173376712	173453910	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g02196.1

ATGGAGGAAATGTATGACAACCTTCAGAATGCCGAAGGAACGCCATTCATGGATCCATTCGAAAAATACAAAGACGAGGCCCATAAACAGGCAGTCAACATACCCAAAGTTCATGTCAAAATAAGGAAATCTTGTCATGAAGCATTCCCTTATTTGGGCATGGATGAAACATATGATCTGGTAATAAAGAAGACTAAAACCTACATCTGGGCGAATGACGTCTGGGGTGCTCTACGAGGACTGGAAACTTTCAGTCAGCTTGTTGTCCGTGGCCCAGATGAAGAGCTCTATCTCAAAGACACGATTATCAGCGATTACCCAAGGTTCAGGCATCGAGGGCTGCTCATTGACACATCCAGACATTATATCTTCAAGAAAGTCATCTTCGATGTGCTGGAAGGAATGGCTCAGAATAAAATGAACGTCTTACATTGGCACATTGTTGATGACCAGTCATTCCCATATGAGAGCAAACTCTATCCAGAGTTTAGTAAAAAGGGTTCTTATCACCCATCGTTTGTGTATACACATGACGATATTAAAGAAATCATTGATTTTGCAAGAATGAGAGGCATCCGTGTGATACCAGAGTTTGACACACCTGGTCACACTTATTCATGGACACTGAGTCACCCGGAGATATCAACACAGTGTTATGAAGGCGGACGGCCAGTCCATGGGTACCGAGGCCCTCTCGACCCCAGTAACAATCGAACGTACACAATACTGAGAAACTTGTTCTCAGAAGTTCTTGAAGTCTTTCCAGATAATTTCCTACATCTTGGTGGCGATGAAGTGCCAATGTCATGTTGGTATTCTAACCCCAAAGTTTTACAGATGAACAAGGACTTGGAGAAAAGGAAACCTAGATCTCAAGATACAACATACAACCAGCCAAATACATATAACCAGTATGACAACTCATATACGGCTGGATACGATATGAAAACCATCCTCAATTATTATGAGAACAGAATGATCAGTGATATCCAAAGAGAATCAGCCAAGAAGAAAAAAGAAACTCGCTTGATCATGTGGCAAGAAATCATGAATAACAACATCAAGCTTCCAAACTCCAGCGTTATCCAAATTTGGATGGGTGACATGTCCGAAGTACAAAGAGCCATTAATTTGGGGTATGAGGCAATATATTCAACATGTTGGTACCTTGACCTAATTGAATATGGAGTCAAATGGTCAAAATACTACACCTGTGATCCAGCAGATACTTCATTCGGTTATGAGATAGATGAGAAGAAAGTTCTTGGTGGCGAGGCATGTCTATGGGCCGAATATATAGACAATGAAAATCTCATATCCACTCTCTGGCCTCGAGCTTCATTGGCTGCTGAGCGACTGTGGAGTAGCAAAGATACGAAAGACATCGAGAAAGCAGCACCACGTCTACAGGAGCATCGATGTCGAATGCTCGGGTGTATGTTCTACGACAAACCATGTATCATCAAAGAGCGATTCAAGAAATCATATCGCCATCCTAAGTTGGATAAATCACTGACAATACAGCGTTTGAAATCCGAAGCGAGAGCCATGCTGCGAGCACGAATTTTTGGTGTACAGGCTCCAGCTGTATATATGCTTGATATGGAGAGTAACTCTATATACATGGAGGACATTACTGACTCTATCACTGTGCGAGAACATGTCTCGAACATACAGGAACAGTTTCCAACTGACTTTACACAGAGATTGGCACCAATCAGCCAGAAAATTGGAGAGGTCATAGCAAAATTGCATGCCAACAACCTGATCCATGGAGATCTAACCACGTCGAATCTCCTAATCCGTGGCTGTCCGGATAACCTTGATATAGTAGTAATAGACTTCGGTTTGAGTTCTTCAGAAGGCACGCCTGAAGATAAAGGAGTTGACTTGTACGTGCTAGAGAGAGCATTTTTGAGCACTCATCCAAACACAGAGGCTCTCTTCCAGAAGCTTCTGGACTCATATGCTTTGAATACTAAAAATAATGCTGATGTCATGGCTAAGTTAGAGGAGATTAGGCAGAGAGGCAGAAAGAGAACCATGGTTGGATGA

Transcript

Sda_chr07g02196.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00728	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF06293	Kdo	Lipopolysaccharide kinase (Kdo/WaaP) family	Family	Interproscan
PF14845	Glycohydro_20b2	beta-acetyl hexosaminidase like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015883	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR022495	Family	Serine/threonine-protein kinase Bud32	Interproscan
IPR025705	Family	Beta-hexosaminidase	Interproscan
IPR029018	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR029019	Domain	Beta-hexosaminidase, eukaryotic type, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004563	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0006689	Biological Process	ganglioside catabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030203	Biological Process	glycosaminoglycan metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-