Gene detail

Detailed information of Sda_chr07g00864.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g00864.1	SLIT HOMOLOG	Sda_Chr7	70572613	70681355	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g00864.1

ATTCTGAATGACCAGGCAATATTACAGGAGACGGGGAAGTTAAGGAACTGGCGAGATATTACGCAGTTAGTGTACACAAATGGAGGACTGACGGAGCACACGAGGCATGTCAAGGGAAGAAACGTTGCCATACAACATCTCCTTGAAAAAAATAGCAACGTGCTCGATGGACACCACAACCAAGACTCGCAATATAATCTTGAAATCATTATAGACAAACCAGAACGCGAAGAACACGATGAATATTCAATAAGCGAGATGACTGAGTCGCGGTCGTATTGGATTCATCCAGCTCCGTTCCGTGGCTTCATAGATTCATCCAGCCCCGGTTTCGTGTTAGACCTCAGTTACAACAAATTACAAGTGGTCGGCAGGAAGACTTTAGCTGGTTCTCTCGTCTTACGCAATCTCCAACTTGATCACAATATGTTAACATGTCTATCAACTGAAGCACTGAAAGGCCTACACAGCATGGAAATACTAACAATGAACCACAATAACCTAACAACCATTCCACAGGATTTATTTGTGTTCATGACAAGCTTAAGAGTACTACGACTTGGTGACAACAAACTGTATTGTGATTGTGAGCTAACATGGCTGCGGAAGTGGCTCCGATCTAAGCAACAGCTAGCGTTATTCACAGAGTGTTATCGGCCCTACCACCTGCGCAATATGGAAATAACGGAACTCAGCGAGTCAGACTTCAAATGCAATGGTATACGACCAGATACTGGAGATTGTCCATCAGAGAACCGATGTCCACACCCATGTTCCTGTACGGAGGGAGTGATAGATTGCAGGGACAAGGGTCTGACAGAGATTCCGAGAAATCTACCCATCATGGCATCTGAAATACGATTGGAGCAGAATCAGATCTCTAGAATTCAATCAAAGGTGTTTTCGTACATGCACCGACTTCGTAGAATTGATTTCAGTAATAACCAGATTTCATACATTGCTCCGGATGCATTCTACAGTCTCAGTTCTCTCAACTCACTAGTGCTGTATGGAAACAAGGTAGCTGAGTTACCAAACGGAGTGTTCAGAGGACTGAGAGCCCTACAACTGCTCTTGCTTAATGCCAACCAGATAACATGTATCCGTGACAACACTTTTCAAGATCTAAACAACCTCAACTTATTATCACTCTACGACAATCAGATTGAATCGATAGCAAATGGAACATTCACCCCTATGAAAAATATCCAGACTTTACATCTAGCTCGAAACCCATTCATTTGTGACTGTAACCTACGATGGCTGTCAGAATACCTTCACAAGAACCCGATAGAGACAAGCGGGGCTAGATGTGAACTTCCGATGAGAGTGGCTCGCAAAAAGATCGGACAAATCCGACCCTCCAAATTCAAATGTAAAGGTGGTGAGGTATTCCGTACAATAAACGCTGGGAAGTGTCTAAAGGACACTGAATGTCCGAAGGAGTGTTATTGTGAGGGTACGACAGTCGATTGCTCCGAGAGAATGTTTAGCGACATGCCAACAGAACTCCCAGAATACACCACAGTACTAAAGATGAGTGGAAATAAAATAACACGAGTGAAATCAACTGGATTGTTCAAGAAACTACCAAATCTACAAACAATAAATCTCGATGACAACAAGATTGAGATGATTGAAGATGGAGCTTTTGACGGTGCAGCAAAGGTCACGGCTTTGTCTCTTTCCAACAACAACCTCGCACATTTCACGAGTAATATGCTGAGGGGACTTAAGGATTTGAGGAGCTTGGCCAGTGCTGGTAACAAGATAACATGTCTGAGTAACGACACATTCACAGATTTAACAAACCTAAGGCTTCTGACATTTTATAACAATAAAATGAGATGTATTATGGATGGAACATTTGACAGACTGCACTATCTCTCTACGCTAAACTTGATAGATAATCCACTGAACTGTAACTGCCATATGAAGTGGATGGGACCATGGCTGAAGCGGCATAATGTAATCACTGGAAGTCTGATATGTAAATCACCCGAGACCCTGAAGAGCGCTCCGTTACAAGATGTTAGGGAGAAGGATTTCATTTGCGATGAAAACAATGAACGCAGATGTAATGTTGGACCGATGGCTTGCTGTACATCTGGCTCTGCATTTGATGAATCAGAGAGTAGCTGTGATCCTCGAGCATACTGCCCACCAAACTGTACATGTACTGGGACGATAGTCCGATGTCGACGACAGAAACTAACAGCAATACCAGAGAACATACCATCAGATACGACAGAGCTGTACCTTGATGAGAATGAGATTTCTGGAATATCTACCTCAATCAACCACCTCAAGAATCTCAACAGACTGGATCTGAGTAACAACATGATTATATCGCTGCCTGATTACGTCTTCTCCAATCTCAGCAAAATGTCAACATTGATTTTGAGTAGAAACAGGCTGCAGTGTATGGCGAGAACCAGTTTATATGGACTCAAGAGTCTCAGAATTCTGACCTTACATGAGAACAACTTGTCAACGATCCCATATGGTGCCTTCAAAGATCTGGAATCACTGACACACATCGCTTTAGGAGAGAACCCGCTGCACTGTGATTGTAACCTGAAGTGGCTATCGGAGTGGATTAAGAATGAATACGTCGAGCCCGGTGTGGCCAGTTGTAAAGGACCACCCGAAATGTTGGGCAGGAAAGTCCTCACCAGTCCAGTCAGCTTCTTCCAGTGTCAAGGAAACCCAGACCCCATCATTATGGCTAAGTGTAATGCTTGCTATGACAATCCGTGCCAGAACGAGGGTACCTGCCACCTGGTGGCATTTACGAACTACAGCTGCTCCTGTACACCAGGCTTCCATGGTCGCAAATGTGAACACGTGATTGATGCTTGCTATGGTAGCCCCTGTTTGGGACACGGACGATGTGAAGTCCTCGATCACGGCAGATTTGTTTGCCACTGTGATGCTGGGTTTGCGGGCGATCGATGCCAGATAAACATAGATGACTGCACAGAACATGAATGTCAGAACAACGCTACCTGTGTGGACGAGATCCAGTCTTACACATGTAAATGTTCATTCGGATATAAAGGAAAGAAATGTGAGACAAAGATCCCGTTTTGTGAAGCTGGACACAATTATTGTCAGAATAACGCCAAGTGCATTAAGCTTGATTCAGATTACAGGTGTGATTGCCCGAATGGATTTGCTGGTAAAAACTGTTCAGATAACAACGATGACTGCAGTGCACACAAATGTCAAAATGGGGCTACATGTATTGATGGAACAAACTCATACAGATGTCTATGTCAGTATCCTTATAAGGGCAAATACTGCAATGAGATTACCAGTTCTGTGACCGCCAGGCCGAAGTTTCCACGGATGAGCGTTTGTAAGAACAGTGATTGCAAGAATAACGGAGCCTGCTATCAGGGTAGATACTCAGCTGATTATCAATGTAGATGCCCCCTCGGATTCTTTGGAAAGAAATGTGAGAAAGTTCGATCAGTGAATTTCGCCCACAAAGACTCATATGCTCACCTCCCAGGCTTGGATTTCTCTGCTGCGATAAACATAACAATCAAACTCGTCACTGATCAGAGCACAGGAGTCGTACTGTATGCTGGGAAGGATCACCATGTAGCCGTTGAATTATTCCGTGGGAGAGTTCGTGTCAGCTTTTATGTAGGAAACAAACCATCATCGACGATGTTCAGTTATGAGACGATTGACGACGGACAGATGCATACCCTTCAAATGCTGATTATTCGTAAAAATTTCACAATGAGAGTTGACGATGGATTGTCCCGATCAATTGTTAATATAGGGCAGCGTGACCTTCTGGAAGCAGAGAATGACCTTTACCTTGGTGGAATGCCTCATAATGTTAGCAAAAGGGCCAAGGATAAATGGCATATACAGGATGCCAAGAGTTTCCGAGGTTGCTATAGTAGCGTGTTCATGAACGAGAGACTCACAGATTTCGCCTCATCTAAATACCTCCATAAGGTCACACATGGATGTAAGGCGCACCCATGTGACGAGAATGCTTGTAAGAATGGAACTTGTAAACCGAAGAAGCATAATCGAGGTTACAGGTGCAAGTGTCGCCGTGGATACTCAGGAAAATATTGTGAACAAGAACCTACATGTAAAGAGATTGCCTTCAGAGATCACTACATCGATCCAAAAACAAAATGTCGCTCAAAGACGAAGATAAAATTCCGAAGATGGAGAGGCAGAGAGAATAAAGATGAGAGAGTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACTTAACACACAGTTAGTTCTAATAAATGCATTAGAATGTATCTTTAGATCGCAACAATCTCAATAA

Transcript

Sda_chr07g00864.1

GATTCTGAATGACCAGGCAATATTACAGGAGACGGGGAAGTTAAGGAACTGGCGAGATATTACGCAGTTAGTGTACACAAATGGAGGACTGACGGAGCACACGAGGCATGTCAAGGGAAGAAACGTTGCCATACAACATCTCCTTGAAAAAAATAGCAACGTGCTCGATGGACACCACAACCAAGACTCGCAATATAATCTTGAAATCATTATAGACAAACCAGAACGCGAAGAACACGATGAATATTCAATAAGCGAGATGACTGAGTCGCGGTCGTATTGGATTCATCCAGCTCCGTTCCGTGGCTTCATAGATTCATCCAGCCCCGGTTTCGTGTTAGACCTCAGTTACAACAAATTACAAGTGGTCGGCAGGAAGACTTTAGCTGGTTCTCTCGTCTTACGCAATCTCCAACTTGATCACAATATGTTAACATGTCTATCAACTGAAGCACTGAAAGGCCTACACAGCATGGAAATACTAACAATGAACCACAATAACCTAACAACCATTCCACAGGATTTATTTGTGTTCATGACAAGCTTAAGAGTACTACGACTTGGTGACAACAAACTGTATTGTGATTGTGAGCTAACATGGCTGCGGAAGTGGCTCCGATCTAAGCAACAGCTAGCGTTATTCACAGAGTGTTATCGGCCCTACCACCTGCGCAATATGGAAATAACGGAACTCAGCGAGTCAGACTTCAAATGCAATGGTATACGACCAGATACTGGAGATTGTCCATCAGAGAACCGATGTCCACACCCATGTTCCTGTACGGAGGGAGTGATAGATTGCAGGGACAAGGGTCTGACAGAGATTCCGAGAAATCTACCCATCATGGCATCTGAAATACGATTGGAGCAGAATCAGATCTCTAGAATTCAATCAAAGGTGTTTTCGTACATGCACCGACTTCGTAGAATTGATTTCAGTAATAACCAGATTTCATACATTGCTCCGGATGCATTCTACAGTCTCAGTTCTCTCAACTCACTAGTGCTGTATGGAAACAAGGTAGCTGAGTTACCAAACGGAGTGTTCAGAGGACTGAGAGCCCTACAACTGCTCTTGCTTAATGCCAACCAGATAACATGTATCCGTGACAACACTTTTCAAGATCTAAACAACCTCAACTTATTATCACTCTACGACAATCAGATTGAATCGATAGCAAATGGAACATTCACCCCTATGAAAAATATCCAGACTTTACATCTAGCTCGAAACCCATTCATTTGTGACTGTAACCTACGATGGCTGTCAGAATACCTTCACAAGAACCCGATAGAGACAAGCGGGGCTAGATGTGAACTTCCGATGAGAGTGGCTCGCAAAAAGATCGGACAAATCCGACCCTCCAAATTCAAATGTAAAGGTGGTGAGGTATTCCGTACAATAAACGCTGGGAAGTGTCTAAAGGACACTGAATGTCCGAAGGAGTGTTATTGTGAGGGTACGACAGTCGATTGCTCCGAGAGAATGTTTAGCGACATGCCAACAGAACTCCCAGAATACACCACAGTACTAAAGATGAGTGGAAATAAAATAACACGAGTGAAATCAACTGGATTGTTCAAGAAACTACCAAATCTACAAACAATAAATCTCGATGACAACAAGATTGAGATGATTGAAGATGGAGCTTTTGACGGTGCAGCAAAGGTCACGGCTTTGTCTCTTTCCAACAACAACCTCGCACATTTCACGAGTAATATGCTGAGGGGACTTAAGGATTTGAGGAGCTTGGCCAGTGCTGGTAACAAGATAACATGTCTGAGTAACGACACATTCACAGATTTAACAAACCTAAGGCTTCTGACATTTTATAACAATAAAATGAGATGTATTATGGATGGAACATTTGACAGACTGCACTATCTCTCTACGCTAAACTTGATAGATAATCCACTGAACTGTAACTGCCATATGAAGTGGATGGGACCATGGCTGAAGCGGCATAATGTAATCACTGGAAGTCTGATATGTAAATCACCCGAGACCCTGAAGAGCGCTCCGTTACAAGATGTTAGGGAGAAGGATTTCATTTGCGATGAAAACAATGAACGCAGATGTAATGTTGGACCGATGGCTTGCTGTACATCTGGCTCTGCATTTGATGAATCAGAGAGTAGCTGTGATCCTCGAGCATACTGCCCACCAAACTGTACATGTACTGGGACGATAGTCCGATGTCGACGACAGAAACTAACAGCAATACCAGAGAACATACCATCAGATACGACAGAGCTGTACCTTGATGAGAATGAGATTTCTGGAATATCTACCTCAATCAACCACCTCAAGAATCTCAACAGACTGGATCTGAGTAACAACATGATTATATCGCTGCCTGATTACGTCTTCTCCAATCTCAGCAAAATGTCAACATTGATTTTGAGTAGAAACAGGCTGCAGTGTATGGCGAGAACCAGTTTATATGGACTCAAGAGTCTCAGAATTCTGACCTTACATGAGAACAACTTGTCAACGATCCCATATGGTGCCTTCAAAGATCTGGAATCACTGACACACATCGCTTTAGGAGAGAACCCGCTGCACTGTGATTGTAACCTGAAGTGGCTATCGGAGTGGATTAAGAATGAATACGTCGAGCCCGGTGTGGCCAGTTGTAAAGGACCACCCGAAATGTTGGGCAGGAAAGTCCTCACCAGTCCAGTCAGCTTCTTCCAGTGTCAAGGAAACCCAGACCCCATCATTATGGCTAAGTGTAATGCTTGCTATGACAATCCGTGCCAGAACGAGGGTACCTGCCACCTGGTGGCATTTACGAACTACAGCTGCTCCTGTACACCAGGCTTCCATGGTCGCAAATGTGAACACGTGATTGATGCTTGCTATGGTAGCCCCTGTTTGGGACACGGACGATGTGAAGTCCTCGATCACGGCAGATTTGTTTGCCACTGTGATGCTGGGTTTGCGGGCGATCGATGCCAGATAAACATAGATGACTGCACAGAACATGAATGTCAGAACAACGCTACCTGTGTGGACGAGATCCAGTCTTACACATGTAAATGTTCATTCGGATATAAAGGAAAGAAATGTGAGACAAAGATCCCGTTTTGTGAAGCTGGACACAATTATTGTCAGAATAACGCCAAGTGCATTAAGCTTGATTCAGATTACAGGTGTGATTGCCCGAATGGATTTGCTGGTAAAAACTGTTCAGATAACAACGATGACTGCAGTGCACACAAATGTCAAAATGGGGCTACATGTATTGATGGAACAAACTCATACAGATGTCTATGTCAGTATCCTTATAAGGGCAAATACTGCAATGAGATTACCAGTTCTGTGACCGCCAGGCCGAAGTTTCCACGGATGAGCGTTTGTAAGAACAGTGATTGCAAGAATAACGGAGCCTGCTATCAGGGTAGATACTCAGCTGATTATCAATGTAGATGCCCCCTCGGATTCTTTGGAAAGAAATGTGAGAAAGTTCGATCAGTGAATTTCGCCCACAAAGACTCATATGCTCACCTCCCAGGCTTGGATTTCTCTGCTGCGATAAACATAACAATCAAACTCGTCACTGATCAGAGCACAGGAGTCGTACTGTATGCTGGGAAGGATCACCATGTAGCCGTTGAATTATTCCGTGGGAGAGTTCGTGTCAGCTTTTATGTAGGAAACAAACCATCATCGACGATGTTCAGTTATGAGACGATTGACGACGGACAGATGCATACCCTTCAAATGCTGATTATTCGTAAAAATTTCACAATGAGAGTTGACGATGGATTGTCCCGATCAATTGTTAATATAGGGCAGCGTGACCTTCTGGAAGCAGAGAATGACCTTTACCTTGGTGGAATGCCTCATAATGTTAGCAAAAGGGCCAAGGATAAATGGCATATACAGGATGCCAAGAGTTTCCGAGGTTGCTATAGTAGCGTGTTCATGAACGAGAGACTCACAGATTTCGCCTCATCTAAATACCTCCATAAGGTCACACATGGATGTAAGGCGCACCCATGTGACGAGAATGCTTGTAAGAATGGAACTTGTAAACCGAAGAAGCATAATCGAGGTTACAGGTGCAAGTGTCGCCGTGGATACTCAGGAAAATATTGTGAACAAGAACCTACATGTAAAGAGATTGCCTTCAGAGATCACTACATCGATCCAAAAACAAAATGTCGCTCAAAGACGAAGATAAAATTCCGAAGATGGAGAGGCAGAGAGAATAAAGATGAGAGAGTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACTTAACACACAGTTAGTTCTAATAAATGCATTAGAATGTATCTTTAGATCGCAACAATCTCAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01462	LRRNT	Leucine rich repeat N-terminal domain	Family	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000372	Domain	Leucine-rich repeat N-terminal domain	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051355	Family	Notch and Slit guidance protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836	SLIT HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0048495	Molecular Function	Roundabout binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-