Gene detail

Detailed information of Sda_chr07g00764.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr07g00764.1	T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG	Sda_Chr7	64129236	64204530	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr07g00764.1

ATGAATCTTTCTCAAATATTTGTCAATAATTGTGCCATATTTGTTCTGGTATCTGTCTTTTTGCTGACAAATGTCAAGTGTGAACTAGCCGACATATCGGCCGGTATATTTCCATCTGATCTTACCGGTATTTTAGCTGCTTTTGGTGATTTCAATGCTGACAAGAACACGGACATATTTGTCATCACCGATGACGGTGGAAGCTTATCACTGCTACTAGCGAATCAGGACAAACCATTTTCAAAGAAGGACCTGATAAAGGGCTCAGCAAGTGATAAGTCACACATTACCAGCGTTGTTCCCGCTGATTTCGATGGCGATTCCCAAATGGATGTCCTCGTCACAAAGAAACAACAGGACGACACTGACACTCTCTCAGTTCAGATCTACTGGGGCAGTACAAAGTCCGTATCTTTAGATTCTCCAACAACTTTGCCACTATCACCAGTAGATCAACCAATGATATTGGACTACAATGCTGATATGCTTCCTGATCTGCTCTACACAGAAAAAGATGTGAAGAGGAAAATCATTATGTTTAAGGGACGAGAATTGACTACTGCTGAGCTTACTAATGGTACCTTGAATAGTACTTTGCCTAAAATCAGACTTCCACATTCCAATGCATTCGTTGATCTGAATGGAGATCTCATATCAGATCTTTGCATCACTTCTGAAGTTGGAGGCAGATTTCAGCTGGAGTTCTGGTTTAATAAGGGTGGAAAATTTATCTGGAATGCAACCTATATTATACCAGAAGAATTAAAGGTCCTTGGACAATCGTTATTTGTAGATATAGATAATTTGAATGGAGTAGATGTAATAATTCCAGCATGCGGGGACGATGCGTGCGATCAAAGCAAACTACTTATTCTCTCAAAGGGTCAATGGAACATCATTGATATGCCGCTAACTATTGGTGAGCAGAAGTGGAAGTTTGTACCCTTTGTGAGTGCCGAGCAGTCGACTAATCCGATACCTATGCAGGCCCGCAGTGCAGACTATAACCTCGATGGCTACCCAGATCTCATTATACTGTTAGTCACACAGTTAGATAGTGGCAAACAACAGAGTGCATTCTTGCTACAGAATGTTGAGTGTTCAGAGGCAGCATGCAAGACGATACGTCGAACATTTTCGCCTGTCTGGGGAGAAACTCTCACCTCATCAACCGAATCATCTCTCATTCCAACATTCTTCGATTATCAGGAAAATGGTGTACTGGACATCATACAGACAGTGCTGGTGGACAGTAAGCCAACGCTGAAACTCTTAAAGCATGAGATTCTGCAGGATATAGGATTTGTTAAAACTATGGTTGTGAGTGGTCTTTGCTATGACAACTGTCCAGGTCAGAGGCAGCCGTATGGAGTCAACCAGTATGGACCAGTTTCAAAATTTCAGACAACTACATACACTGGAGCTGTATTGTCTGGAGAAGCAACTCAGATGAGTCAGTCTGCACACTTTGCTCTCCAGCTGCCATATACTGTGTTCGGACTCGGAGAAACAGCAAACTTCATAGATTCCATTCAAGTTGGAATTCCCACAGCAGATACAAAACCACGAACAAAGAAATGGACATTCCTTATTCCAAATTCCCAACTGATTGTTATTCCATATCCAGTGGATGATCCTGATGAGTGGACCATTAAGCTGTTCCTCACACCTAGTAAGCTGGTGATGCTGACAGGTATAGCGCTGTTAGGAACATGTGGATTTATAGCCATCCTCGTTGGAATTCTACACTGGGGAGAGCGATATTGGAAGTCTTATATTTCTGTGAATTTCAAACTCAATTTCAATCAAATCATGGGATTTGTGAAGGTGATATTTGAGACACATTATTGGGCGCCGCATTCGGCGAGGATTGGAATACTCGGATCGATTCCCGACCTGGGACTCTGGCAGCCTCAGAGGGCCTTGGTTGCGGAGAAAGGCGACGATGGCGAGTGGGCGGCGAGTGGAAATCTACCATCAGGAAGAGTGATAAAATACAAGATGGTGATCCTCTCGCTGGATGGCCGCATGGTCATCCGGTGGGAGGAAAGACCCAATAGAACCATCGAGCTGCGTCCCTGCTCGGGAAACCTTGCTATACATATCCGTTCATTGTGGAATATGGATGAGATATCATTCACTTTGAAATTGATGCCGTCATTTGAGGGAATAGAAAGAGAAGGACCCAACGGTGATGATAGAGGTGTTCTAGAGATTACACAGACAGATTCAACCGCGCCAGCATGTGTGAAATTTCTGGAGGAAGCTTCTCCACGGCCGAACATCGCACGTGATATCGAGCTCACACGACACAGTTCACCAGCTTTGACCATAGCAGCTAAAGATGACGAATTCCATCGCAAAATTGATGACATTTATTTCTCAAAGATGGACAAGTGCCACAGTGAACCAACTAACTGTGGTAAAGAGAAGAAGAAGGGGAATGTAATTAGAAGATTGTTTCGATATCTATCAAAAAAATTCAGCTCCAAGCGCGTCAAAAATACACAATGA

Transcript

Sda_chr07g00764.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00686	CBM_20	Starch binding domain	Family	Interproscan
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002044	Domain	Carbohydrate binding module family 20	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013784	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR024881	Family	T-cell immunomodulatory protein	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13412	T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:2001070	Molecular Function	starch binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-