Gene detail

Detailed information of Sda_chr04g01062.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr04g01062.1	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Sda_Chr4	85069272	85148944	-

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr04g01062.1

ATGGCACTGTCACAAGGCCAGAGGACTATTCCACAAAGCAAAGAAGCTCTGCTCAAATCATATACACAAAAGCTGAGAGAAGATGTGAAGAGTATGCTGGACAACTATACTGATATAATCAAGATCGCTCGGACCGAAGAAGACTCACAGATAGCAAGACCAACCCAATCTGAGCAAGACATGTATGAGATGAATGTTAGAGCTTCCAATATCGTGAGATCTGCAGAAACACTGTTGAAACTTGTGTCAGATATCAAACAGTTCCTCATACTGAACGACTTTCCATCGGTGAATGATTCAATCACAAATAAATCTCAGGACAATGCCTATCCAGCTGATGAGCTTATGCCTCTGAGTTGTAAAGGACGGTATCGTGGAACTGAACGCGACAGAGGAGATGTTGATGAGGCTCTGGGAAACTTCACCTTGACCCTAATTGACAGCTTGGATACTTTGGTGATATTGGGTGAACTTGATGAATTTGAGAAGGCTATAAAGCTGGTTATCAAAGATACTAAATTTGACAGTGATATTATTGTATCAGTCTTCGAAACCAATATTCGTATTCTGGGGGGTTTACTAAGTGGTCATGTGATGGCTTCCTATCTACGCAAGAAACGGAAAATGTTGGTGTGGTACAATGATGAACTACTAACGATGGCTCAAGAAGTTGGCCAGAGATTATTACCTGCATTCAACAGTAGCACTGGTATTCCTTATCCAAAGATTAATTTGAAGTATGGCGTAACAAAACCACTGAAACAGAAGCATCCGGATACATGTACATCATGTGCTGGCAGCATGATTTTAGAGTTTGCTGCTCTCAGTCGATTAACAGGCAATCCTGTTTTTGAGGATAAAGCCAGGAAGGTTATGGATTATCTGTGGAATCAAAGACACAGGGCTAGTGATCTTATGGGGACCATCATCAATGTAAACAATGGCGACTGGAAAAGAAGAGACAGTGGTGTCGGTGCAGGCATCGACTCTTATTATGAATATGTATATAAAGCCTACATTCTCCTTGGTGAGGACACATATAATGATAGGTTCAATAAGCACTATGATGCTATTATGAAGTACGTCAGCCAGGGACCAATGTTACTTGATGTCCACATGCATCGTCCTCACACATCATCAAAGAACTTCATGGATGCACTACTGGCATTCTGGCCTGGGCTGCAGGTTTTGAAAGGAGACATAGGGCCAGCCATAGAAACTCATGAGATGTTGTACCAATTAGTGCAGCGGCACAACTTTCTTCCTGAGGCATTCACTACAGACTTCCGAGTTCACTGGGGTCATTCTCCACTAAGACCTGAGTTTGTCGAGTCAACATTCTTCCTCTACCAGGCAACTGGTGACCCTCACTACCTCGATGTTGGGAAACTAGTTTTGGAAAACCTCAACAAACATGCCAGAGTTCCATGTGGCTTTGCTTCAATAAAAGATGTCACTCAAGGAACACATGAAGATCACTTGGATTCCTTTGTTTTCGCCGAGACATTCAAATACCTCTACCTGCTGTTTTCCGAGAAAGATGAAAGAGTCGTTGATATTGATGATTACATCTTCACCACCGAAGCACATCTTCTTCCATTATCATTGTCGTCCATTGAAAAATTCAAACCAGTGCCAAAAGTGAATCAGGAGGTATATTCTCAATATGCTAGTCAGTCAGCAGTGGAGAATCTCATTCAGGATAACATGAGCTTCGACGAAGATGAAGATGACTTCGAGGAGGGACCTGAGAACACATGTCCATTGATCAAGCATCGACATCCTGATACAATCACTTATGCGGGAACACTCCGGGAACAACTAAAAGGGCTGGTTCATAAACAAAGGGACCAACAAGTTAGTAACAGACCACGACTGCGAGCTGCTGAGTTTGTGGCGGGGAACAAAGAGCAGCTGGTAATGTTACAGCACATGGGAATCCGTATCATGACGATGGCTGACGGGAGGATACAGTTACTACACACAGCATCTGAAGCTCGCAATGCGGCTGATGCTGATGATGGCATGAGGTTCATGCAAGAAATGATCGAGCTCTCCAAACAAGAAGCAAATGAAGTTCATCACGAACCAATGACTGTCCAGATTGTACTTCCTAACAAACAGACTATCCTAAAATCATTCCAAGCAGGACCAGCTCAGTTCGGCTACGATCTCAAAGTCAATCCTTCAGTTGAGGGCCATTTAGTTATAGCCAATCCAATAAAAGGTTGTGAGTCATTCAGCAATGATGACCAATTTAACGGGAAGATTGTCGTCCTGGAGAGAGGGAACTGTATGTTCATTGATAAGGCAAGAAGAATAGAGCTGGCTGGTGCAGTAGGAGGAATTGTGATCGACCACAATGAAGGTTCAGATTCAGAGAAGCAACAGTTGTTTGCTATGTCAGGTGACGGGAAAGAAGATGTCAACATTCCAATGGTCTTCCTCTACGCTAAAGAAGGACTCTGGCTAAAATCGGCCTTCATCTCTAATCCGAACATCTTGATTCGTCTGATATACACTGGCAGAGGTGTCGCTCCTGACGTGCCAAAGCCAACAAACTTTCCAGATGATAAATATTCAGCAGTAGTATCAGACTCCACCATTAAGGTTGGAGAATCAGACATCAACCTGGGGCCTTTTAAAAATTACAACGAAGAGGTGCAGGAAGAAATAACACATGTAATCAAGACAGCAGGGACAGATAATGTGAAGATGATGATCGATTTCGGAACTGGTAGTTTGAAGGGTAAAGAAGTGTCAGTGTATGATGTCATAGTTTTTGAAACGAACGAAAAGGGGGAGCCTGAAATTATTTTTGAGATCGATGGCGGCCTTTTCGAAAGTCGATCGGCTCCAGCATTGACTGAGATATATGGTTTGATAGTTAGATTGCTCAAGGAGGAAACCAACTTTCTCGATTTAGATAAACAGCAGCAGAAAATCACAGCTGTAGCTACTCTTCTGGAAACAACTTTTCTAGGACGAAATACAGTTAGTCACGAATCAGAATCTTTGCTCAAAGAATTAGCATACGAACTGAAAATACTTGCTATAAAAAGACCTGCAACTAGTGAAAATGATCGTCTTGAGACGGATGACCTCAAGGAACTTTTTGACGAAGGTTGTAAGAGTAGTGACGATCAAGCACACAGCTTTCATAATCCAGACTCTGTCTCAGGTTGTGATTCTGAAGGAAGTGGTGATTCCTCTGGTGATATGACAGAAAATAGTCCGTCCGCGGCGAATAACGGGCCCGGTAACTGTGATAAAGTGACTGAGAAGGATACTCCTGTTGAGTTAACGGCAACAACAGAAGGATTTACAGTGAAAATTAATGCCGGAAGGACTACCAAAGGGGAGGTAGATTCTGATAAGGATAGCTCAGTTCATGGAAATCTCAAACAATCAATTCCTGATAGACAGGAGCAACAGTCTTCTCAAAGTTCTAACATTATAACGAGTGAAGATGATACTATGAAGCCACACATTCCTAAAATCAGAGTTGAAGTAAATGGGGTTGTGGTTGAGAAAGTCATACAAAGACCGAAAGACACAAGTGAAAATGCAGATAAGAAGCATGATGAGTTGTGA

Transcript

Sda_chr04g01062.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan
PF02225	PA	PA domain	Family	Interproscan
PF06179	Med22	Surfeit locus protein 5 subunit 22 of Mediator complex	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR003137	Domain	PA domain	Interproscan
IPR009332	Family	Mediator of RNA polymerase II transcription subunit 22	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR044674	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan
IPR046450	Homologous_superfamily	PA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45679	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0004559	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:1904380	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-