Gene detail

Detailed information of Sda_chr04g00376.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr04g00376.1	CADHERIN-23	Sda_Chr4	28298418	28374699	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr04g00376.1

ATGTGTTCTATCACCGAGACACTCAACATCGCAAAGAAACTCAACTGTCCAAATAGTGGTTGCGTCATTGATATGAGTGGATCGAGATCCTGGTGTGAACCAAGTGAAGCTGCTGAACCCGTGGACGTGTGCCCGAATGATAGTGTGCCATTGGTAGAAAACGGCAACCAGGTGTTCTGTGGACGCGGTCTGAACAGGAGAGATTGTCCGAGCACACATTATTGTGACATAGCACCAGACGACACACACGCCTTCTGTTGCAAACGGGATATAATACCGAAACCAAGTGTACCCATACGGCCCGTTGCTGACCCCAGATGTCCAAAACTAGCAAGTGGAACATTCGGGATATGTGTGGAAGGCTGCCCAGCTGGAGGATGTCCGCAAGGAGAAGCATGTTGTTCTAACGGATGTGGACACACGTGCCAGAAAGTCGCTTCAACTCCCTGCCAGGACACACTCTGTGAGATGTTTTGTAGTGATGGTTTCAAGCGCAACAAGGAAGGCTGTACCATTTGCGAATGCAACTCATGGGGCTCTACAACAACAGATCTCCCCTATCACCGAAGAAATTGTGCCGATGGCAGTAAGCCATTATCAGTCAATGGGAGACAACTCTTCTGTGGCATGAGCCCGTTCCCAGATCATTGTCCGTCGACTCATTTCTGTGACGTAGCACCAGACGACTCCCATGCATTCTGCTGTCTCAAAAAAGAGTTGCCTCCCCCACCAACAGTTCCTTGTCGCGACACACTTTGTAAGCGGCTTTGTCGTTATGGTTTCAAGCGTAATGAGGAAGGCTGCACCATTTGCGAATGCAACTCAGTGGGCTCTACAACATCACGACCGATAACCAATCCATTCCAAAACAACTTTATGACGATGTGGCAGAAATGGATGGAGAGATTCAACGCTTTAAATAACAAGAACTCCAAAGGTCTGATGTCATTCCTCAATAGCTTATTCAACGCCCAGAAACAGCTCAAAGTCTTGTCAGTATGCAAGAGTAAATATAGATGTCCTAGTCTGAAATGCCGTGCCGGAAGGGTGCGAGACGAGAACAACTGTGAAACATGTCGCTGCATCCAAGAATGTCCAGTGTTTAAATGCGTAGCTTGTCCAAATGGTTACGAAGTCGATGCCCGAGGGTGCCAAACTTGTACTTGTAAAAAACAAGACAGAGCATTCAAATGTGGACCAGTCTGTATGGTGTACTGCCCGAACGGCAACGTGATGGACTCTAATGGCTGCCCAACGTGCCAGTGCAATCCAGATGTACCCATACGACCCGTTGCTGACCTCGGATGTCCAAAACTAGCAAGTGGAACATTCGGGATATGTGTGGAAGCCTGCCCATCTGGAGGATGTCCGCAAGGAGAAGCATGTTGTTCTAACGGATGTGGACACACGTGCCAGAAAGTCGCTTTAATTGATGTTAATGATGAGCCACAATACTTCACAAACCGCCCGTATCCCTACCTGGCGGCGGTGTCACCCAACGCACATGCGGGACAGCACGTTTATTCCGTGGAAGCCGAGGATCCGGACACAGACTCCAATGTTATTTTCACCCTTGTATCAGAGATGAACCGCTTTACATTGATGAACACGCGGCAAGGCAACAAACACATCGGCGAGATCAGAGTGGCCCAGGGTGCATCATTCATTCCCGCACAAACGTACCGAGTGGTAGTCGAGGCTAGAGATCAGAATGCACCTAATAGCCAGACGGCCCGAGCGGTTGTGCAAGTGTACGTGGGAAGCAGAGCACCACAATTCTTTGTGGGGAATTACACCGGCGAGATTCGTGAAGGTGGCCAGCCAGGTCAAAAACTTCTGCTAAAGGGAAGTAATCAGGAACTTGTTGTCAGGGCGCTAAGCTTCCAGAACCAGCCACTATCGTATGAACTCACGGACGACAACAACATGCCAACTGATGTCTTTATCTACCAATCACAGACCGGAACTGTTGAAGTTCAGCGGACCTTAGATTACGAAACAGGACCAACGGGATACTCACTCAAAATCCGGGCCACAGAGTTGACAACCAATCTTCATACGACTGTAGATCTTGCAGTGGACGTGATTGATGTTCCAGAGAATATCGCTATCGATGACAGACTTATGACAGCATTTAAATGTGGACCAGTCTGTATGGTGTACTGCCCGAACGGCAACGTGTTGGACTCGAATGGCTGCCCAACGTGCACGTGCAATCCAGATGTACCCACTGACCCGAGATGTCCCAAACTAGCAAGTGTACCATTCGGGATATGCGTGGAAGGCTGCCCATCTGGAGGATGCCCGGAAGGAGAAGCATGTTGTTCTAACGGATGTGGACACACGTGCCAGAAAATCTCTTCAACTCCCGTCTGCCCACCACAGATATGTCCGATGATCTACTGCCCTAACGGACACACGAAGGATGCCAGCGGATGTGACACGTGTCAATGCGCAGGAGCATGA

Transcript

Sda_chr04g00376.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02822	Antistasin	Antistasin family	Domain	Interproscan
PF14625	Lustrin_cystein	Lustrin, cysteine-rich repeated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR004094	Domain	Antistasin-like domain	Interproscan
IPR006150	Repeat	Cysteine-rich repeat	Interproscan
IPR008197	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR011061	Homologous_superfamily	Hirudin/antistatin	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR028150	Repeat	Lustrin, cysteine-rich repeated	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004857	Molecular Function	enzyme inhibitor activity	Interproscan
GO:0004867	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0030414	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-