Gene detail

Detailed information of Sda_chr03g02109.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr03g02109.1	MYOSIN HEAVY CHAIN, NON-MUSCLE	Sda_Chr3	158532984	158597605	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr03g02109.1

ATGGATTTCTCAAGTGACCCAGACTTCCAGTTTCTCGCCGTGGACAGGAAGAAGTTGATGCAGGAACAGACAAAAACGTTCGATGCCAAGAAATCATGCTGGGCGCCACACCCCAAGGAGGGGTTCGTCAAGGCGGATATCGAGAGCACAGATGGTGACAAGGTCACGGTGAAGACTGAGAAAAGGGAGACGATGACGTTGAAAAAAGACGAGATCCAGCAGATGAACCCACCTAAATACGAGATGATAGAGGATATGGCTAACATGACGTACCTCAATGAAGCTTCTGTGCTTCACAACTTACGATCCAGATATACCAGCGGCATGATATATACATACTCTGGATTGTTCTGCATCGCCGTTAACCCTTATCGGCGGCTGCCTATTTATACAAGAAGCGTCATCGATAAATATAGGGGAAGGAGAAAGAACGAAATGCCTCCTCACTTGTTTTCCATCGCTGACAACGCTTTCCAGTTCATGTTGCAAGATCGTGAGAACCAGTCCTGCTTGATCACTGGGGAGTCTGGCGCGGGCAAAACTGAGAACACGAAGAAGGTTATAATGTATTTTGCTCTGGTCGCCGCCGCTAGCTCGGACACCAAAGCCGAACATGATCCCAACTCTAAGAAGGGTTCACTAGAGGACCAGATAGTACAAGCCAACCCGGTGCTCGAGGCTTACGGTAACGCAAAGACGACAAGAAACAACAACTCCTCAAGATTTGGGAAGTTCGTCAGGATTCACTTCGGACCACAAGGGAAGATCGCCGGCGCCGACATCGAAACCTATCTGCTTGAGAAATCCCGAGTGACATACCAACAAACTGTGGAGAGAAATTATCACATCTTTTATCAGCTTCTGTCCAACGGTATCGAGGGTCTGCCAGAAAAGCTATTGGTTCAGGCCGATCCAGGTTTATACTCAAACATCAACCAGGGTGTACTGGCGGTAGACAGCATTGACGATGTACAGGAAGCCAAAGACTGTGACGCTGCCTTCGATATATTGGGTTTCTCGGCAGAAGAGAAGTTTAGTGCATACAAATGCACGGGGGCCGTTTTACATTTCGGAGAGATGAAATTTAAACAGAAGGGCAAGGACGAACAGGCGGAACCTGATGGAACAGCAGAGGCCGAAAAAGTCGCCTTTTTGCTCGGCATAAACGCCGGTGACCTACTGAAGGCGTTCACGAAGCCAAAGATTAAGGTCGGAACAGAGTTCGTGACACAGGGCCGCAATGTCGGTCAGGTGCTCTACTCCATTTCCGCCATGTCCAAATCACTCTACGACCGATTATTCAACTGGATGGTCAAGAGAGTCAACCAGACACTTGACACAAAACAGAAGAGGAGCTATTTCATCGGCGTTCTCGATATCGCCGGCTTCGAAATATTTGAGTTCAACAGTTTTGAGCAACTGTGCATCAACTACACCAACGAGAGGCTGCAGCAGTTCTTCAACCACCACATGTTCGTGTTGGAACAGGAAATGTACGCCAAGGAAGGAATCGAGTGGGAGTTCATCGACTTCGGAATGGATCTGCAGGCCTGTGTTGACCTCATCGAAAAGCCGCTTGGAATCTTGTCCATACTTGAAGAGGAATGCATGTTTCCGAAGGCAAGCGACCAGACATTCAAGGATAAGTTGTACGGAAACCACATGGGGAAATCCAAAAACTTTGGTAAACCAGCTAAAGCCAAGCCGGGGTTACCTGAGAACCATTTCGCTCTGGCCCACTATGCTGGAAATGTGAGCTACAGCATTGCTAATTGGTTGGAGAAAAACAAGGATCCAGTCAACGAGACTGTTGTTGAGCTCTTGTCTCAGTCGAAAGAGCCATTGGTCAACCTTCTCTACCAGGCTCCGAAAGAATCGGAGCAGACTGGTGGAGCGAAGAGAAAGAAGAAGAGTTCGGCATTCCAAACTATCTCTGCGACTCATCGGGAATCCCTCAACAAGCTTATGAAGAACCTGTACAGCACGCATCCGCACTTCGTTAGATGCATCATCCCAAACGAGCTCAAACAACCCGGTATGATCGATGCCGGGTTAGTCCTCCACCAGCTGCAGTGCAATGGCGTACTGGAGGGAATCAGAATTTGTCGAAAGGGCTTCCCCAGCAGAATCATCTATTCGGAGTTCAAACAGAGATATTCAATTCTGGCTCCCAATGCTATTCCTGATGGATTCTGCGAGGGCAAGCTGGCCACTGAAAATATTCTAACTGGTATGAGCATGAATACAACAGACTACAAACTTGGCAACACCAAAGTGTTTTTCAAGGCTGGGGTGTTGGGAGACTTGGAGGAGTTGAGAGACGAATCACTGTCGTCTATCGTTGCTAAGTTCCAATCCTTCATCAGAGCCTACATTCTCAGGAAATCCTACAAGAAGCTCCAGGATCAGAGAACTGGCTTGAGCATTGTCCAGAGAAACACAAGGAAATGGTTGGGTCTGAAGAACTGGTCCTGGTGGAGACTCTATGTCCAGATCAAACCAATGTTGAACGTAGCCCGAGAAGAGGAAGATATGAAAAAGAAAGAGGAAGAAATTGTTAGAGCAAAGGAAGAACTTGAGAAAACGGCATCAATGCGCAAAGAACTAGAAGAACAGAATGTTACATTGCTTCAACAGAAGAACGACATTGTGATACAGCTGCAGTCAGAACAAGATCACATTGCTGACCTTGAGGAGACAGTCGAATTGCTTGTGGGACAGAAGATAGAGTTTGACTCCAGAATAAAGGATATGGAAGATCGTTTGACCGACGAGGAGAGCGCTTCCACTGGAATGCACGAGAAACAGAAGAAGATGGAGCAGGAAATCTGTTTGCTAAACCAGGATTGTGGAGACCTCGAACACGCACTGACAAAGATTGAACAGGAAAAGTTGGCCAATGATAATGAGAACAGCATGGTGAAAGACGAGCTGGCACAGACTGGTGACGCTGTTATTAAGCTGGCAAAGGAGAAGAACGCTTTGGAAGACACCAACAGGAAAGTCATGGACGACCTCCAGGCTGAGGAAGACAAGGTCAATCACCTCAACAAACTCAAACATAAACTAGAGGGATCCATGGATGAGTTAGAAGATTGCCTGGAACGGGAAAGAAAGGTAAGAGGAGATGTTGAGAAAACTAAGAGAAAGCTGGAACATGATCTGAGGGCCACGCAGGATATTGTCGATGAACTGGACAGAGCGAACCGTGATTTGCAAGACGTCGTAAACAGACGAGATGTCGACATCATTGCATTGAATTCAAAGATTGAAGATGAACAAACAGCGAACTCCCAGCTGCAACGGAAAATCAAGGATTTACACATCCATATGGGCGAAATGGAAGAGGAACTGGATGTCGAACGGGCTTCTAGGTCAAAGGTCGACAAGCAGAGAGCAGAATTAGCTCGAGAGTTAGAGGATATATCAGAAAAATTAGATGACGCTGGAGGTGCCACGACTGCTCAGGTCGAGCTGAACAAGAAACGCGAACAGGAATTATTAAAACTGAGACGCGAGTTGGAAGACAAGACACTCCAGAGCGAGGCTCAGTTGTCCGTTCTCAGAAAGAAGTTACAAGACACCGCTGCTGGCCTCTCCGATCAGATTGAGAACTTACAGAAGGCTAAGGCGAAATGTGAGAAGGAGAAGAGTCAATACAAAAACGAGATCGATGAACTCGTTCCTCAGGTGGAATATTTCAAGAAGAACGGAGGAGCTTCAATTAAAATTACGAAGCAGATGGAATCCCAGATAGTCGAGTTGAACTCACGCTTGGACGAGTGTGACCGACTAATAAATGAACTCAAGGGTCAGAAATCGAGACTTCTTGACGATAACGCTTCACTGACCACACAGCTCGAGGATGCTGAACATATCATCGGGCAGCTCAAAAAGGAGCGAAAACAGCTCAATGACCATTTCGAGGAGGCAAAACACACGATGGAAGAGGAGACCAAGGCTCGTCAGAAGGCACAGAGCGAGATACGCCATCTGCAGACAGAGATAGACCAGTTACATAGTCAGATCGAGGAACAGTCTGATGTTAAAAACGACCTCCAGAGGTCACTCTCCAGAACAAAAGCAGAAATCGACACATGGAGAATCAAATATGAAAACGAGGGCGCACACCGTGCCGACGAATTGGATGAGGCCAGGAGAAGACTTCAATCGAGGTTGCAAGAATCCGAACATAGTTGTGAGACACTCTCAACCAAATTGAACAGCACAGAGAAGGCTAAGCATAGAATCGCCGGCGAGCTCGAAGATGCTTTGGTGGAAGTTGAAAAGTCCAACAACGCATTGACATCTATGGAGAAGAAACAGAGGGCTATCGACAAAACCATTCAAGAGTGGGAGGCTAAATATAAACAAGTGTCAGCAGAATGCCAAACGTCACAGCAACAGTCACGTGACGTTTCTGCCGAATTGTTCCGAGCTCACGCCAAAGCTGAAGAGTTTGAAGATACGATCACATCACTTAACCGAGATAACACAAATCTCCATGATGAAATCCACGACATCGTCGAACAAATGGGACAAGAAACTCGCAACATCCACAACCTCGAAAAGACCATTCGTAAAACCGAGACAGAGAAACAAGAACTGGAATCAGCGCTCGAAGAGGCTGAGTCGGCGTTAGAAGCTGAAGAAGCCAAGGTCCAGAAGCAACAGATTGAAATTGCTAACACCAGGGCTGATTACGAAAAGAGATTGAATGAGAAGGAGGATGAATTCGATTCCACTCGTCGTAACCACCAGCGGGCTGTGGAATCCATGCAGTCTAGTTTAGATGCCGAGGCTAAGACTAGAGTTGATATGATGAAGACCCGTAAACGACTTGAAGCAGACATCAACGAGCTGGAAGTGGCGCTAGATGGCGCCAACAAGTCCAAGGCTGAAATGGAGAATACATCAAAGAAATACTTTCAGCAAATTAGGGAAATGGAAGTGGTTATACAAGAAGAGATCCGACAAAGGGATGACGCCAGAGAGACTCTTAACGTCGCAGAGAAGCGCATCGCAACCATGGCGGGAGAGATCGAAAGTTTAGGAGCTACCGTTGAACAGTCTGATCGAGCCAGAAAGACAGCAGAAAATGATCTCGCCGAAGCGGAATTGCGCATTGTCGAAATTTCTTCACAGATCAACCTCCTCACGACTCAGAAGCGACAGTTAGAGACTGACGTTATCTCCATGCAGCGAGGCTTGCCATACAACAGAATGATGGCTGACAACGAAGCGTTTGACAAATGTTTGAGCGATGTTTTGTCGTATATGGACAACATTTCCGAGCTAAAGGCAGAACAAAAGACGATTTTACGAAGCATTCTACTCGACAGAAAAGATGTGCTCGCTATACTGCCCTGTGGTTACGGGAAAAGCCTACCGCATCAGATTTCAACGCTGGTCACATCAAAATTAAAAACGACATTCCCAGATCTAGGGTGCGCCAAATCCTTACCGGAGCGAAGCTGTGTATTAGTTGTTACACCAATCCTTTCGTTGATGGCAGATCAAGTGAGCCGACTTTCCAAAATGGGTGTCAACACAAGGTACATTGGACAGTCTGATGATGACGATGCAAAGATCATCAATGGGGATGTCGACATTTTCTTCGGAATGCCAGAATCCTTGGTTGGAACCGACAAATGGCGAGATGTCTTGCTCTCAGAATATAGGGAGAGAATGCTGTGTGTTGTGATTGATGAGGTCCACACAATTCCAAAATGGGGAAAACAGACAGGCCAGAACAAGAAGAAGGCTTTTCGAGAGTGGTTCGGACATGTCAATGAGCTCAGATCTGTCTTCCCTGATGTGCCATTTGTTGCATTAACAGCCACTGCATCTCATGCTACAACTCAGTGGATAAAAAAATACTTGTTCCTGAATACAGATTGTGTGTTCCTGACGAGGAACCCAGACCGCCCAAACATAAAGTTAACTGTGCAAAAACTACCCGGACGGTCGGTCGAACAGAACTTGTTTTGGTTGGCTGATGTTATAAATGATGCCAGCAATCCTCTCGACATTCCTCGGATTGTGATTTACGCTACATCATTGGTCACCTGCTCTGCCATTTGCGACTACCTCGTAACCGAAACAGACCAGGACGACTCCATAGATGTGTTTCATGCGCCAACAGAAATGCCGGACAAGGAGCGTATCCTGCAGCAGCTGTCTGAAACCGACAGCAAACTGAGGATCGTTGTCGCCTCCAGTGCCCTTGGAATGGGGGTGGACATGAAAGAATTCAACACAGTGATTCACTATGGACCTTCCTGGACCCTCGAGGACTATCTGCAAGAGAGCGGAAGGGTCGGCCGAGATGGAAGCCAGTCTCTGGCAGTGATTCTTGTGAATGGCAATTTGAAGAGAAATGCTAACGAGGACATGACTGCATATGTGAACAACACAGATCAATGCCGCCGACAGATGCTGCTTAAGCAATTCGTGACTGACTTTAAATCAACTGTCAATCATCAGTGCTGTGATGTGTGTCAACGTTCGTGTCAATGTGGAGATTGTGAAATTTCAGATGTGGAAAAGCGTCTGAACATGTTCAATGTTCATAATGAAATTTCCCCGGCAACAACCAGTTCAAATATGGAGGCAGTGGCGGCAGGTCCTTCCTTAGCAACTGTTGCTAGGCAACTGCCCAACATCGAATAA

Transcript

Sda_chr03g02109.1

Protein

Sda_chr03g02109.1

MDFSSDPDFQFLAVDRKKLMQEQTKTFDAKKSCWAPHPKEGFVKADIESTDGDKVTVKTEKRETMTLKKDEIQQMNPPKYEMIEDMANMTYLNEASVLHNLRSRYTSGMIYTYSGLFCIAVNPYRRLPIYTRSVIDKYRGRRKNEMPPHLFSIADNAFQFMLQDRENQSCLITGESGAGKTENTKKVIMYFALVAAASSDTKAEHDPNSKKGSLEDQIVQANPVLEAYGNAKTTRNNNSSRFGKFVRIHFGPQGKIAGADIETYLLEKSRVTYQQTVERNYHIFYQLLSNGIEGLPEKLLVQADPGLYSNINQGVLAVDSIDDVQEAKDCDAAFDILGFSAEEKFSAYKCTGAVLHFGEMKFKQKGKDEQAEPDGTAEAEKVAFLLGINAGDLLKAFTKPKIKVGTEFVTQGRNVGQVLYSISAMSKSLYDRLFNWMVKRVNQTLDTKQKRSYFIGVLDIAGFEIFEFNSFEQLCINYTNERLQQFFNHHMFVLEQEMYAKEGIEWEFIDFGMDLQACVDLIEKPLGILSILEEECMFPKASDQTFKDKLYGNHMGKSKNFGKPAKAKPGLPENHFALAHYAGNVSYSIANWLEKNKDPVNETVVELLSQSKEPLVNLLYQAPKESEQTGGAKRKKKSSAFQTISATHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGMIDAGLVLHQLQCNGVLEGIRICRKGFPSRIIYSEFKQRYSILAPNAIPDGFCEGKLATENILTGMSMNTTDYKLGNTKVFFKAGVLGDLEELRDESLSSIVAKFQSFIRAYILRKSYKKLQDQRTGLSIVQRNTRKWLGLKNWSWWRLYVQIKPMLNVAREEEDMKKKEEEIVRAKEELEKTASMRKELEEQNVTLLQQKNDIVIQLQSEQDHIADLEETVELLVGQKIEFDSRIKDMEDRLTDEESASTGMHEKQKKMEQEICLLNQDCGDLEHALTKIEQEKLANDNENSMVKDELAQTGDAVIKLAKEKNALEDTNRKVMDDLQAEEDKVNHLNKLKHKLEGSMDELEDCLERERKVRGDVEKTKRKLEHDLRATQDIVDELDRANRDLQDVVNRRDVDIIALNSKIEDEQTANSQLQRKIKDLHIHMGEMEEELDVERASRSKVDKQRAELARELEDISEKLDDAGGATTAQVELNKKREQELLKLRRELEDKTLQSEAQLSVLRKKLQDTAAGLSDQIENLQKAKAKCEKEKSQYKNEIDELVPQVEYFKKNGGASIKITKQMESQIVELNSRLDECDRLINELKGQKSRLLDDNASLTTQLEDAEHIIGQLKKERKQLNDHFEEAKHTMEEETKARQKAQSEIRHLQTEIDQLHSQIEEQSDVKNDLQRSLSRTKAEIDTWRIKYENEGAHRADELDEARRRLQSRLQESEHSCETLSTKLNSTEKAKHRIAGELEDALVEVEKSNNALTSMEKKQRAIDKTIQEWEAKYKQVSAECQTSQQQSRDVSAELFRAHAKAEEFEDTITSLNRDNTNLHDEIHDIVEQMGQETRNIHNLEKTIRKTETEKQELESALEEAESALEAEEAKVQKQQIEIANTRADYEKRLNEKEDEFDSTRRNHQRAVESMQSSLDAEAKTRVDMMKTRKRLEADINELEVALDGANKSKAEMENTSKKYFQQIREMEVVIQEEIRQRDDARETLNVAEKRIATMAGEIESLGATVEQSDRARKTAENDLAEAELRIVEISSQINLLTTQKRQLETDVISMQRGLPYNRMMADNEAFDKCLSDVLSYMDNISELKAEQKTILRSILLDRKDVLAILPCGYGKSLPHQISTLVTSKLKTTFPDLGCAKSLPERSCVLVVTPILSLMADQVSRLSKMGVNTRYIGQSDDDDAKIINGDVDIFFGMPESLVGTDKWRDVLLSEYRERMLCVVIDEVHTIPKWGKQTGQNKKKAFREWFGHVNELRSVFPDVPFVALTATASHATTQWIKKYLFLNTDCVFLTRNPDRPNIKLTVQKLPGRSVEQNLFWLADVINDASNPLDIPRIVIYATSLVTCSAICDYLVTETDQDDSIDVFHAPTEMPDKERILQQLSETDSKLRIVVASSALGMGVDMKEFNTVIHYGPSWTLEDYLQESGRVGRDGSQSLAVILVNGNLKRNANEDMTAYVNNTDQCRRQMLLKQFVTDFKSTVNHQCCDVCQRSCQCGDCEISDVEKRLNMFNVHNEISPATTSSNMEAVAAGPSLATVARQLPNIE*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00063	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01576	Myosin_tail_1	Myosin tail	Coiled-coil	Interproscan
PF02736	Myosin_N	Myosin N-terminal SH3-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001609	Domain	Myosin head, motor domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002928	Domain	Myosin tail	Interproscan
IPR004009	Domain	Myosin, N-terminal, SH3-like	Interproscan
IPR008989	Homologous_superfamily	Myosin S1 fragment, N-terminal	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014751	Homologous_superfamily	DNA repair protein XRCC4-like, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45615	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000146	Molecular Function	microfilament motor activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003774	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016459	Cellular Component	myosin complex	Interproscan
GO:0016460	Cellular Component	myosin II complex	Interproscan
GO:0032982	Cellular Component	myosin filament	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-