Gene detail

Detailed information of Sda_chr03g00234.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr03g00234.1	DNA POLYMERASE	Sda_Chr3	17413133	17450471	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr03g00234.1

ATGGTTATGTTACAGGCGGCGATTGTGGTTTTTGTGATATGTGGCTTGCACTTTGTCAACGGAAGAGAACATACATTGGACGAAATAATACAGGATGCGACGACCTCTGACGCAGGATTGATGGGTGGTGAGCCCGACGACATAATTGAACTCGACATAAAACTTACTCCGGATGAACTCGCCAGCAGAAGAGAAGGGAATCAGTTGACACGTTTTAAAAGAGCTGGCAGAATTGCGACAGAATACAGATGGCCGGACAAAACAGTCCCGTATGAAATAACTTCAGATTTCGATGCTACCCAAGCTGCTCTAATCGTCGGCGCAATGGCTGAATGGGAGGACGTTACGTGCATCCAATTCGTGCCACATACAAGCCAGACAAACTACGTCAAATTCATAGCAGAAGACGGGTGTTGGTCGTTTGTAGGAAGGATAGACTATATGACGACTGGTCAGAACATATCATATGGCTCCGGATGTATTGATCAGTCTGTAATGGTGCACGAAATGGGTCATGCGCTCGGGTTGTACCATGAACAGTCTCGACCAGATCGAGACAGCTTCGTTACAATAAACTTTGGTAACGTCGTTCCGGATAAAGAGTCTAATTTCCAAAAGAGGGATGAAACGGATGTATCCAACTATGGCACACCATACGACTACACTAGCGTCATGCATTATGGAAGATATATGGAGCGGTTAATCGATGAATTGCACGCCAAGGGATTTAGTAGTGATGACGTTCTAAGAGGTATCACCGGTAGAGTGGACTCAATGTCCGAGACAGACAGAAATACGTATGACAGATTGATATATCTGGAGGGTAGACAGCAGTCGCCCGATAATGACGGGCCAGCCCCCGCAACGTCTCAACCGCCTGACTTATCCCGAGCCGCTCACCAGTCATCCGCTCTAGATTTAAACGGACGGAATGAACCGCAGGAAGTTACTCTCGACACTAGTCACGATGAGCAAACTCGGCAGACGGCTAATCAGTCCTACACGATCAATCTTCGTGAAATAAAATCATTCATGAGGTCATCGGCTGTGGAAAGTATATACGACGTGAAATTTGACCATCAATGGCGCGGTGAACTGTTGTCAGACTTGACGGAACGACTTACCAACATGTTCGATCACCTACTAAGAACGACGAGAGGTGATTTGGCAGACAATGATCTGGGAAGAGTTATCCTCCATACCGATCAGTTGGATAAACCCATCATAGTACCGTTAACGGCATGGTCGGACATGAATTCTCAGTTGATTATCGACAAAATAGCTAATGTGCTGACATCGCACGAACATATTGACTTGGACCGATCATTTCGAATAACTGTAGGGTCACTGAGGCAACCCAGTGGCTCAGGCGGTGGAATTCCTATCGACGGTGACAAATCACTTCTGGACAAAAAATCAACAGTCTTCGTCCACAATACTGACAACTCCTGTTTGTCTAGAGCTATAGGCGTCGCAGTGGCCAAGATTAGTACAGTTTCCGAAGATCTTAAATCGTCTTATCCCGGATTATCACGGCTCGAAATTTTTCTAAAACACGGTAAAGTGACGAAAGACTATTATAAGCACCTGACGAAAAAAGGGCGAAATGACCAAAAAGTGTTAGCAAACACCCTGCTTAAAGATTTATGTATTTCAGCCGACCGCCCGGGATCATACGCCGACCTACCAAAGTATGAATCGTTCTTCAAGGTGAATATTATAATCATATGCGGCGAAATTGGAAAAAAAGTATCCAGAGTCAGCAACAACTATGACAGGAATATATATCTGTATCATAATCAGGACCACTACACACGGATAGTCAGCGTTTCAGGATTCTACGGCCTATCTTACTTTTGTGAAAATTGTTTAAAGCCTTTCAACAAGAAAGATGAACATAACTGCACGTCATATTGCATAGTATGCAAAACAGAGGGATGTTTGATTGACCCTTTATTAATGGGCAAGTTATTAACGTGCCACGATTGTAATATGGACTGTAGATCTTTGAACTGTTACCAGAGACACAAAGAGGCACCTGATAATAAACTATCAAATTGTTGTAAATATTTGAAGTGTAGAGAGTGTGGAAGCGTAATGAATCGTGCGAAGAGGGACCTAACAGAAACACCCCACATTTGCGGCGAATGGTCGTGTTCATCTTGTAAGGAATGGGTACTTCCGGGTCACCTATGTTATTTGAGACCTCCGAAACAGAAAGTGAAAGATGTCAACAAGTTCATATTCTACGACTTTGAATGTTCACAAGATGAGGTGTACCTATGTGACGGTGGATACAAAATGGGACTCCCTTGCTCTACGTGCAGTGAAGCGGAAAGATGCAGTCAATGTCGCCGCGACACGTGCGGAAGAAGACAGTACATATCGTCTGGTTCGGACACTCTACTGAACTTCGGAACCTGGCTGTTTACTAAACACCATAAACACGCCACGGTATTGGCTCATAACAACAAGGCTTACGACGCTATATTGTTGCTGGAATACATGGTTTTCCAGGGGATGAGGCCTAGCAAAATTATTTATTCTGGATCGAAGGTCATGTACATGCTAGGTCACCATGGGATTCGAATAATAGATTCGCTAAATTTTCTGACGATGCGATTGGCTGCTCTCCCGAAGGCTTTCGATTTGAAGGAACTAAAAAAAGGATATTTCCCTCATTTCTTCAATAGGAAGGAGAACCGACTGTATGAGGGGCCGTATCCCGATTCAACGTATTACGGGGCTGACACCATGTCGACGACAGACAGGGAGGCGTTTCTACGTTGGCACGAAACTAAAGCCGGTGAAATCTTCAATTTAGAGAAAGAATTATTGGCTTACTGCATTTCTGACGTTGATATCTTGCGTCAGGCTTGTTTGAAGTTTCGGTCATTGTTTTTGAAAGTTACCGAGAATAAGGTAGATCCTTTCATGTCGATAACGATATCTTCTGCGTGCATGAAGGCCTATAAAATATTGTTCTTGGAAGAAACTTATTCTATAACTCTCACTAACTCTGATCAATCAGAAACCATTCCTAACGGGTTTTACGGTGACAAGGACCAATATTCGAACGTCTCCATCCAATGGTTGTCCTGGTTGGCCCACAATAAAAATAGAGACATACAGCACGCTTTGAACCGCGGTGAATTCAAGGTACCAAATTCAAAGTACAAGGTGGATGGATATTGTCAGGAGACCAACACCTGCTACGAATTTCACGGTTGTTTTCATCATGCTTGTTTGACGTGTTACCCACGAAACAGACACATCTCCAAACACCCGCTGACAAAACAGACACTGAATCAACTGTACACACTGACCATCAAAAAGCGTGAATTTTTGAAGAAGGCGGGTTACAAATATGTATGCATTTGGGAGCATACATTCACTGAGCAGAAAAAAAATAATGAAATACTGCGGGACTTCTTGTCGCAGCTGGATGTACAACCTCGACTTATGCCACGAGATGCTTTCTTCGGAGGTAAGACAAATGCCTGCAAATTATACAAAGACGCGGGCCCCCGTGAGAGCATCAAATACGTCGATTTCACGTCCCTGTATCCTTATATAAATAAATCGGGCAAAATGCCAGTAGGGCATCCTGAAATAATAACTAAGGACTTTAAAGATATCAGCGCATATTTCGGGCTGGCTAAGGTGAAGGTTTCTCCTCCGAGGAAATTGTACCACCCCGTATTGCCATTGAGATCTCACGGAAAACTCACCTTTCCTTTGTGTCGATCATGCGCGGAAGATCAAAGACAAACGACGTGCGATCACGGTACCGATGCGAGATCTATAACAGGAACGTGGACGACGCCAGAGATAATGAAGGCCATAGAGAAGGGTTACGTGGTGACGAAAATATACGAAGTATATCACTGGACAGATACCACGCAATACAATCAGGATACTAAGAAAGGTGGACTCTTCTCGGAATACGTCAATTCCTTTCTCAAACTCAAACAAGAAGCTAGCGGTTGGCCAGCCTGGGTGAAAACTGCCGAGGACGAGTGCAGATATCTGAATGATTACGAAAGGGTCGAGGGGATTCGTTTGGATCCCGAAAATGTAAAAAAACAGCCAGCACTCAGAGCCACTTCGAAACTCATGTTGAACGTTCTCTGGGGAAAATTTGGAGAGAGACAGAACATGACGCAGACGGAGATAATTCACGACAGTGAACCGAAGAAATTCTTCAGTTTGATTTCCGACCCAAAGAAGCTCGTGAAGGACTTCCACATTATCAATGACAGCCACATTCAGTTATCCTACACCCACGACGACCATTTCCTACCCGATGAAAATAAAACTAATATATTTCTGGCCATATACACTACCTCCTGGGCTCGTCTCAAGTTATATGATGTACTGGATCATCTAGGAGAAAGTGTGCTGTATTTTGACACTGATTCCATCATCTACGTACAAAAGACGGGAGGCCCCGACGTCAGCTGCGGTGATTTTCTCGGGGATCTGACCGATGAGTTAAAGGGGGACACTATCACACAATTCAGAAGCGCCGGACCGAAGAATTATGCTTACAGGACGACTGCCTGCGATGAGGTGTGCAAGGTGCGGGGCTTCAGTTTAAATTATATCAATTCTGAGGCCATTAATTTCAAGACCATGAGCACCCTGATTGATAGAAAGAGAAAGGCATTGGACGACCCTGATGTTGTAGAGCCGAAGAGACGACGTTTGGTAGATAAAGAGCGGGAAGGTGAATCCGGCGTACCCGACAAGGTGTTCATAACTGAAAAGAAGATATGTAGAGGTAGTGCCCGTCCTATCCTATACAACAGAATTCAAAAGAAGGTATACAGAGTGGTATACACGAAGAGAGTGATACTAGAAAATATGGACACTATCCCTTTCGGATATTGA

Transcript

Sda_chr03g00234.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF03175	DNA_pol_B_2	DNA polymerase type B, organellar and viral	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001506	Domain	Peptidase M12A	Interproscan
IPR004868	Domain	DNA-directed DNA polymerase, family B, mitochondria/virus	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33568	DNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-