Gene detail

Detailed information of Sda_chr03g00216.1 in Siphonodentalium dalli Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Sda_chr03g00216.1	UBIQUITINATION FACTOR E4	Sda_Chr3	15508308	15551714	+

Gene Structure

More details in Jbrowse Sequence

CDS

Sda_chr03g00216.1

ATGAAGATTCGCAGGAGGAGACTTGCGCGATTAGCAGGTAATCAGCCACCAGTGCAAGAAACTCTGGAATCAGATTCCGTACAACCACAGCCTCCACCGCCACAACCTCCACCATCCATCATAGTGCCTGAAGCTAGTGAAGACCAGACTAATTTTTCAGTTCCCATGGATTCTGCCTCTTTTCAAGAATCGCAGCCTTCAACAATGGAAATAGATTCTGAGTCCTCAGAGAAGCTATTACAATCACAGGTTGATGTTGACTCAGGGATAGAAACAATGGAAGTGGAGGAAGAACCACGTTCTGATACAAAAAGAAAAAGGGACATAAGTATTGGATCAGAAGCCACAGAAGATCACATGCTGAGTGCTATAGGCAGAGTATTTCTAACGTCGTTCACAGATGACTCTCCTGATTCAATGTACATACCAGATATAGTGCATCAATCACAAGATTCTCTTGACATAAACAATACCATAAACCAAGTCCTGATCAATGTCATTTTCAAGATCAAAGAAAGCAAGTCAAACCCAGTCTTATCATTGAAGTCAAAATCACCAGCACCGTCTCCAGTGAAAACCTATAGTTCTAGTCCACGCAGTGTTAGTCCAATGTTGTGTACAGATGAGCCAAAACGTGAATTTTCGTCACGTGTCCCACTTGAGAAGAATAAGGAGGTTGACATACTGAGCTATCTTTTAGACTGCTATGACAGAGTGGCCAAAGAAGAGAGATTGGCTCCGAAGCGGAATAGCGTCCCACCAATGAGTGACTTGCTGTCGGCGGCTCGATGTCAGTGTACATGCCATGCTGCTTTAGTCCTACAAGGTGCTTTCACACATTCCAGATCTCAGATAGGCCAGTCAGTATTATTGCCATTTCTATATTCACATAATCTGCCGAGGGGATTCCTGGCAGAGCTTTTACAGACAACAGCTCATGACGAACATTCATTTAAGCAGATATTTCAGCCCATCATACAGAGTATGACACGGAGAATGGAGGGTTGTTCATTGGATGCTGATGATTATCGGGAGCCTCTTACAGTGTTAGCCGAGTTATGTGAAATAAAGACTGGAAACACAAGACCCATCTGCAATCTCCTTGTGAGACAGTCAAACTGGCTCCCAGAGATTATGTCCAAAGCAGCTGGCATGGAGGTCGAGAAGCTTTCTCTTATGGGGCCTTATTTTGGCTTATCAGTGTTCGCTGAGGATAATGTCGGAGTTGTGGAAAAATTCTTTTCGAATCCTGATATATTGCCTGATAATGCAAGACTAATATACCAGTCACTACAACATGGTCTCGAATTCGTCAGGAGTGAGCTATATCGAATCCTGCACTGTGTTCTGGTAAATGGAGGAAGTCGGGATGCAGCACTTAAATATGTTGCTGATATCCTCGATAGGAACTCTAAAAGAGCTCAGATACAGGTTGATGAGCGGTTCATTTCCGGAGACGGTTTCATGCTGAACTTACTCACAGTACTACAGAGGCTTTCAATGAAGGTTGTTCTCGATAAGGTCGATCCCTTTTACATCCATTCCCCAAACTCTCGGGTAAATGTTGAATCTGAATCTCGGTTTGTTTACACTCCACAAGAGGCAGCAGCATGGCAGGAAAAATACAGTAAGTTGAGTAACCCACCGTCTTCATTGCAAGATCCCAAATTTCCGACAGAATGTTTCTTCCTAACTCTGCATGCGCATCATTTATCGATACTGCCAGTTATACGGAAATACCACCGGAGAATTCGTGCAATAAGAGATCTCAAACGAATGGTTGACGAATTGGAGAACACAAAATCACAATGGGTCAACCAGCCAGTGGCAATAAGAAACAGAGAACTGCTCAAGAAATGGAAGTCACAAGTTCAGCGGCTGCAGAAGAGTAAGTTATGTGCAGATTGCGGTGTGATGGATGAATCTCTGTTGCGAAGATGCCTCCAGTTCTTCGGCATTGTCTCTCAATTCTTGCTCAAGGTTGCCGATCCTCAACACGGAGGGTCTTCTCTTCCACTCAATAAAGACATCCCCGAACTATTTTCCGCAATGCCAGAATTTTATGTAGAGGACATTGCAGACTTCCTACTATTTGTTGTTCAGTATATGCCACAGGTGTTGGATGATCCTTGCACGATGCACATCATTCATAAGATAACTGTGTTCGTGTGCAGTCCCACATACATCAAGAATCCTTATCTCATAGCTAAACTCATAGAGGTCATGTACGTCATGAACCCCGCTGTACAACCAAAGACAGAGAAAATTAGTGACTCACTGCTCAACCACTCGTTATCTCTCAAACATTTAGTATCTGCACTTATGCAATTCTATACAGATGTGGAGACGACGGGAGCCAGCAGTGAATTCTATGATAAATTCACCATCAGATATCACATTAGTATCATATTTAAAGCCATGTGGTCCATCGTCGCTCATCAAATGAATATCATCCAAGTGGCTCATGCAGGGAAGCAGTTTGTAAAATTTGTTAATATGTTGATGAATGACACAACATTTTTGTTGGATGAGAGCATGGACTGCTTGAAGAGGATACATGAAATCCAGGAGCTCGTGGATACGACTGAATGGCAAGAAATGTCCAGGGAACAGCAGCAATCAAAACAAAGACAGCTCTCTATGGATGAGAGACAGTGTCGATCTTACTTAACTCTCGCCACGGAGGTCGTCGATATGTTCCACTACCTCACAGAAAAAATCAGAGAGCCATTCCTTATACCAGAACTTGCAGACAGACTGGCAGCTATGTTAAACTTCAACCTTCAACAACTGTGTGGTGCTAAGTGTAAAAACCTCAAAGTGAAGAACCCAGAAAAGTACGGCTGGGAACCTAAACAACTGCTGAATACATTAACAGACATATATCTTCATCTGGACTGTGAGAAGTTTGCCACGGCGATAGCTAATGATGAGCGATCGTACAGGAAGGAGTTGTTTGAAGATGCAGTAGCCCGGATGAGGAAAGCTTGCATCAAGACTGACGGCGAGATCGAACAGTTCCTTGGTTTACAAAGCAAAATCGATGCTATCCTCGTGGAGATACAGATGGCTGAAGTGGACTATGGAGAAATCCCTGATGAATTCAAAGATCCACTAATGGACACACTGATGAAAGACCCAGTTAAGCTGCCTGGCGGCACTATAATGGACCGTCCTATTATTCTCCGTCATCTTCTCAACTCGCAGTCAGATCCATTCAACAGACAGTCCCTAACAGAGGATGAACTCATACCAGACACAGAACTGAAGAACCGAATAGAACAATGGAGAAAAGAGAAGCTACAGAAAAGGAAGACCTAG

Transcript

Sda_chr03g00216.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564	U-box	U-box domain	Domain	Interproscan
PF10408	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003613	Domain	U-box domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019474	Domain	Ubiquitin conjugation factor E4, core	Interproscan
IPR045132	Family	Ubiquitin conjugation factor E4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503	Biological Process	ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-